View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_low_2 (Length: 439)
Name: NF1174_low_2
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 5522872 - 5523196
Alignment:
| Q |
17 |
tgaactcgtggagaatccgaaagatcaataactttgcgaagaataagctagagatgagctaacacttatatcaaggaaaattcaaagaacgtagaaaatg |
116 |
Q |
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| T |
5522872 |
tgaactcgtggagaatccgaaagatcaataactttgcgaagaataagctagagatgagctaacacttata----ggaaaattcaaagaacgtagaaaatg |
5522967 |
T |
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| Q |
117 |
aaatatcaactcaagaagaaacttcccttcagaaaatatggatctagagctgagattgataagactcaagtgatgtgttatatatgaaataagctagggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5522968 |
aaatatcaactcaagaagaaacttcccttcagaaaatatggatctagagctgagattgataagactcaagtgatgtgttatatatgaaataagctagggc |
5523067 |
T |
|
| Q |
217 |
attacaagaatgaataccttctgaataagcagaagaagtatgtcttcaagaagaagttaatgctagctacatgtgatgatccagaagaaccaaaataaga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5523068 |
attacaagaatgaataccttctgaataagcagaagaagtatgtcttcaagaagaagttaatgctagctacatgtgatgatccagaggaaccaaaataaga |
5523167 |
T |
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| Q |
317 |
tcaagaattataagcaaacgggtgcctta |
345 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5523168 |
tcaagaattataagcaaacgggtgcctta |
5523196 |
T |
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