View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_low_20 (Length: 274)
Name: NF1174_low_20
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 13889156 - 13888889
Alignment:
| Q |
7 |
cattgaaggaggaaatcaaacattgaatggttctcccttaccattaaaagttaatccaggttttgtgcttttcgcttcaatagatagtacatttgacatt |
106 |
Q |
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| T |
13889156 |
cattgaaggaggaaatcaaacattgaatggttctcccttgccattaaaagttaatccaggttttgtgcttttcgcttcaatagatagtacatttgacatt |
13889057 |
T |
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| Q |
107 |
gtgatgtgcatgtttattgagttgaattgaaatttttagaatgatttaattcttatacatcgtcattctaaagannnnnnnacactttcaatgatttaat |
206 |
Q |
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| T |
13889056 |
gtgatgtgcatgtttattgcgttgaattgaaatttttagaatgatttaattcttatacctcgtcagtctaaagatttttttacactttcaatgatttaat |
13888957 |
T |
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| Q |
207 |
tcttattgtgattagtcgacaatgttataacgttttgcactaacggtgtatcaaaattaaagtcttac |
274 |
Q |
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| T |
13888956 |
tcttattgtgattagtcgacaatgttataacgttttgcactaacggtgtatcaaaattaaagtcttac |
13888889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 14029281 - 14029014
Alignment:
| Q |
7 |
cattgaaggaggaaatcaaacattgaatggttctcccttaccattaaaagttaatccaggttttgtgcttttcgcttcaatagatagtacatttgacatt |
106 |
Q |
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| T |
14029281 |
cattgaaggaggaaatcaaacattgaatggttctcccttgccattaaaagttaatccaggttttgtgcttttcgcttcaatagatagtacatttgacatt |
14029182 |
T |
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| Q |
107 |
gtgatgtgcatgtttattgagttgaattgaaatttttagaatgatttaattcttatacatcgtcattctaaagannnnnnnacactttcaatgatttaat |
206 |
Q |
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| T |
14029181 |
gtgatgtgcatgtttattgcgttgaattgaaatttttagaatgatttaattcttatacctcgtcagtctaaagatttttttacactttcaatgatttaat |
14029082 |
T |
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| Q |
207 |
tcttattgtgattagtcgacaatgttataacgttttgcactaacggtgtatcaaaattaaagtcttac |
274 |
Q |
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| T |
14029081 |
tcttattgtgattagtcgacaatgttataacgttttgcactaacggtgtatcaaaattaaagtcttac |
14029014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 7690221 - 7690071
Alignment:
| Q |
5 |
cacattgaaggaggaaatcaaacattgaatggttctcccttaccattaaaagttaatccaggttttgtgcttttcgcttcaatagatagtacatttgaca |
104 |
Q |
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| T |
7690221 |
cacatagaaggaggaaatcaaacattgaatggttctcccttaccattaaaagtgaatccaggttttgtgctatttgcttcaata------------caca |
7690134 |
T |
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| Q |
105 |
ttgtgatgtgcatgtttattgagttgaattgaaatttttagaatgatttaattcttatacatc |
167 |
Q |
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| T |
7690133 |
ttgtgatgtgcatgttttttgtgttgaattgaatttcttagaaggatttaattcttatacatc |
7690071 |
T |
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