View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_low_22 (Length: 258)
Name: NF1174_low_22
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 6185452 - 6185677
Alignment:
| Q |
1 |
ctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacctattataatcagaaataaagtttgccatcattttcgt |
100 |
Q |
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| T |
6185452 |
ctgattaggttgaagaattccacattcaaatgctatagctttcgcagtgaaaacattgtcacctattataatcagagataaagttcggcatcattttcat |
6185551 |
T |
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| Q |
101 |
atagactcgtatgtataaatagaggattttgtagtcaatatcgatcgaaagattaagttactgataaatgagatattttagcaatacctgtgatcatttt |
200 |
Q |
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| T |
6185552 |
gtagacttgtatgtataaatagacgattttatattcgatat---tc-aaagatcaagttactcataaatgagatattatagtaatacctgtaatcatttt |
6185647 |
T |
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| Q |
201 |
gacattcacaccagcatgttggcaagcttc |
230 |
Q |
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| T |
6185648 |
gacattcacaccggcatgttggcaagcttc |
6185677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4236328 - 4236391
Alignment:
| Q |
1 |
ctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacct |
64 |
Q |
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| T |
4236328 |
ctgattaggttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacct |
4236391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 4236517 - 4236584
Alignment:
| Q |
163 |
gataaatgagatattttagcaatacctgtgatcattttgacattcacaccagcatgttggcaagcttc |
230 |
Q |
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| T |
4236517 |
gataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttc |
4236584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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