View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1174_low_25 (Length: 251)
Name: NF1174_low_25
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_low_25 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 31336903 - 31337123
Alignment:
| Q |
30 |
ataattgtacaaataattgaaaaaatcgttaatttaatacaaggaatcgcaaatgaattataataacagaggaaaatttaaagacaacttggaagagaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31336903 |
ataattgtacaaataattgaaaaaatcgttaatttaatacaaggaatcgcaaatgaattataataacagaggaaaatttaaagacaacttggaagagaag |
31337002 |
T |
|
| Q |
130 |
aaaacgnnnnnnnnnntgaagttacaacaacatacaagcgcattattatacttattcttatgcaagcacacaacaagtaaatataaatatagttttgcaa |
229 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31337003 |
aaaacg-aaaaaaaaatgaagttacaacaacatacaagcgcattattatacttattcttatgcaagcacacaacaagtaaatataaatagagttttgcaa |
31337101 |
T |
|
| Q |
230 |
cagaaacacataatttagagtc |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31337102 |
cagaaacacataatttagagtc |
31337123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University