View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_low_26 (Length: 248)
Name: NF1174_low_26
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 43477913 - 43478166
Alignment:
| Q |
10 |
aatatatagagaaggagtctaacttagatgagcagaggtaccatttggaagtaaaactagaagaatgttttgtgc--gtgttctctgtaatggaaaaaca |
107 |
Q |
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| T |
43477913 |
aatagatagagaaggagtctaacttagatgagcagaggtaccatttggaagtaaaactagaagaatgttttgtgcgtgtgttctctgtaatggaaaaaca |
43478012 |
T |
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| Q |
108 |
ttgtcattcttcattttctggcatt-------------cctacagaaaaaccagtccaactaagatccattttcttttatcaattttgttgttctaattc |
194 |
Q |
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| T |
43478013 |
ttgtcattcttcattttctggcattcctacagttaaagcctacagaaaaaccagtccaactaagatccattttcttttatcaattttgttgttctaattc |
43478112 |
T |
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| Q |
195 |
atatttatatgaattaattattcagcttcaacattgcctgtaaattacataatt |
248 |
Q |
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| T |
43478113 |
atatttatatgaattaattattcagcttcaacattgcctgtaaattacataatt |
43478166 |
T |
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