View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_low_28 (Length: 244)
Name: NF1174_low_28
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 18219075 - 18219273
Alignment:
| Q |
28 |
cagtatgttcatcaaggttggttacaacatggggagacaagctcatgtttggccacataaaggtccctcttggtttgcaaatttggaaaccacttttcag |
127 |
Q |
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| T |
18219075 |
cagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttgcaaatttggaaaccacttttcag |
18219174 |
T |
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| Q |
128 |
cctttctatctttgctgctttgtcctctgctgctctgcttcctactaccatttgtgtgtcttctgattttgnnnnnnngacattattacctttctcttc |
226 |
Q |
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| T |
18219175 |
cctttctatctttgctgctttgtcctctgctgctctgcttcctactaccatttgtgtgtctgctgattttgtttttttgacattattacctttctcttc |
18219273 |
T |
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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 43011017 - 43011093
Alignment:
| Q |
28 |
cagtatgttcatcaaggttggttacaacatggggagacaagctcatgtttggccacataaaggtccctcttggtttg |
104 |
Q |
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| T |
43011017 |
cagtgtgttcatcaaggttggttacaacatgtggatacaaactcgtatttgaccacataaaggtccctcttgttttg |
43011093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 43011096 - 43011180
Alignment:
| Q |
160 |
ctctgcttcctactaccatttgtgtgtcttctgattttgnnnnnnngacattattacctttctcttcctcccttgtctcttgtcc |
244 |
Q |
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| T |
43011096 |
ctctgcttcctactaccatttgtgtgtctgctgattttgttttgttcacgttagtacctttctcttcctcccttgtctcatgtcc |
43011180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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