View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_low_8 (Length: 358)
Name: NF1174_low_8
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 6236354 - 6236083
Alignment:
| Q |
1 |
aacaccatgatattattgccttgaccggtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgttta |
100 |
Q |
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| T |
6236354 |
aacaccatgatat-attgccttgaccagtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgttta |
6236256 |
T |
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| Q |
101 |
ccttttgtgttatttcttcttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattctac |
200 |
Q |
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| T |
6236255 |
ccttttgtgttatttcttgttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattctac |
6236156 |
T |
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| Q |
201 |
acccaagatataaataaa----tnnnnnnnntagagaaagtgatatgataattgtgatacattgatgatgatg |
269 |
Q |
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| T |
6236155 |
acccaagatataaaaaaaaattaaaaaaaaatagagaaagtgatatgataattgtgatacattgatgatgatg |
6236083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 6240435 - 6240344
Alignment:
| Q |
84 |
agatatggatgtgtttaccttttgtgttatttcttcttcatttcgttct-tataaatcaaaaaacatagtgacattgattaggaaaataatc |
174 |
Q |
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| T |
6240435 |
agatatggatgtgtttaccttttgtgttatttcatgttcatttgtttgtatataaatcaaaaaacatagtgatgttgattaggaaaataatc |
6240344 |
T |
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