View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11750_high_10 (Length: 528)
Name: NF11750_high_10
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 523
Target Start/End: Complemental strand, 21827140 - 21826640
Alignment:
| Q |
19 |
attttgtgaagttgagacttacgattgaatccctcatgggccattattcaatatactaaatttaaactttttagaaaccttagataataacaattaacac |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21827140 |
attttgtgaagttgagacttacgagtgaatccctcatgaccagttattcaatatactaaatttaaactttttaga---------taataacaattaacac |
21827050 |
T |
|
| Q |
119 |
cttttctttgttttattcagcatctttacctaattgaagttttatatctttgattgatttaatagcattccatttcatctactacaattgtctttgaaat |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||| | ||| |
|
|
| T |
21827049 |
cttttctttgttttatgcagcatctttacctaattgaagttttctatctttgatttatttaatagcattccatatcatctagtacaattgtctctaaaaa |
21826950 |
T |
|
| Q |
219 |
ggtgagatactagttctaaattttaatccatattatttattttttcaatgagtttatcgtctagtattcactttagaacatgatttgaaggctgtctctg |
318 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||| || |||| || |||||||||||||||||||| ||||| || |
|
|
| T |
21826949 |
ggtgagatgttagttctaaatttgaatccatgttatttattttttcaataagtttattgtttagtgtttgatttagaacatgatttgaaggttgtctttg |
21826850 |
T |
|
| Q |
319 |
ttatgtgtaggatattgtggtttaaaggctgattggctttagttggtatgca--------aggatattcttgctaggtgttcaatatcaatcacttgctt |
410 |
Q |
| |
|
||| |||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| |||||| |||||||| || |||| | |
|
|
| T |
21826849 |
tta--tgtaggatattgtgttttgaaggctgactgactttagttggtatgcaaggataataggatatcacacctaggtattcaatatgaactactt--at |
21826754 |
T |
|
| Q |
411 |
ttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagttt-atgtctaaacaaggataagagtgattgtgaattctttacttcattt |
509 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| | | |
|
|
| T |
21826753 |
ttaaggtttggttatttgagcatgaaatcgtattagtagaataacattagtttaatgtctaaacaaggatatgagtgattgtgaattttttacttactct |
21826654 |
T |
|
| Q |
510 |
gcattcatctcact |
523 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
21826653 |
gcattcatgtcact |
21826640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 109 - 523
Target Start/End: Complemental strand, 39602897 - 39602478
Alignment:
| Q |
109 |
caattaacaccttttctttgttttattcagcatctttacctaattgaagttttatatctttgattgatttaatagcattccatttcatctactacaattg |
208 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
39602897 |
caattaataccttttctttgttttatgcagcatctttacctaattgaagttttctatctttgatttatttaatagcattccatatcatctagtacaattg |
39602798 |
T |
|
| Q |
209 |
tctttgaaatggtgagatactagttctaaattttaatccatattatttattttttcaatgagtttatcgtctagtattcactttagaacatgatttgaag |
308 |
Q |
| |
|
||| | ||| |||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||| || |||| || ||||||||||||||||||| |
|
|
| T |
39602797 |
tctctaaaaaggtgagatgttagttctaaatttgaatccatgttatttattttttcaataagtttattgtttagtgtttgatttagaacatgatttgaag |
39602698 |
T |
|
| Q |
309 |
gctgtctctgttatgtgtaggatattgtggtttaaaggctgattggctttagttggtatgca--------aggatattcttgctaggtgttcaatatcaa |
400 |
Q |
| |
|
| ||||| ||||| |||||||||||||| ||| |||||||| || |||||||||||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
39602697 |
gttgtctttgtta--tgtaggatattgtgttttgaaggctgactgactttagttggtatgcaaggataataggatatcacacctaggtattcaatatcaa |
39602600 |
T |
|
| Q |
401 |
tcacttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagttt-atgtctaaacaaggataagagtgattgtgaattctt |
499 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||| || |
|
|
| T |
39602599 |
ctacttg--tttaaggtttgattatttgagcatgaaatcatgttagtagaataacattagtttaatgtctaaacaaggatatgagtgattgtgaattttt |
39602502 |
T |
|
| Q |
500 |
tacttcatttgcattcatctcact |
523 |
Q |
| |
|
|||||| ||||||||||| ||||| |
|
|
| T |
39602501 |
tacttcctttgcattcatgtcact |
39602478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 46974220 - 46974301
Alignment:
| Q |
115 |
acaccttttctttgttttattcagcatctttacctaattgaagttttatatctttgattgatttaatagcattccatttcat |
196 |
Q |
| |
|
|||| |||||| ||||| || |||||||| ||| ||| || ||||| || |||||| |||||||||||||||||| |||||| |
|
|
| T |
46974220 |
acactttttctctgtttcatgcagcatctatacttaactggagtttgatgtctttggttgatttaatagcattccttttcat |
46974301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 183 - 323
Target Start/End: Original strand, 38414709 - 38414849
Alignment:
| Q |
183 |
gcattccatttcatctactacaattgtctttgaaatggtgagatactagttctaaattttaatccatattatttattttttcaatgagtttatcgtctag |
282 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||| |||||| |||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||| |
|
|
| T |
38414709 |
gcattccttttcatctagtacaattgtctcagaaaaggtgagctactagttctaaattttattccatgttatttattttttcaatgtgtttatcgtttag |
38414808 |
T |
|
| Q |
283 |
tattcactttagaacatgatttgaaggctgtctctgttatg |
323 |
Q |
| |
|
||||| || | ||||||||||||||||||||| ||||||| |
|
|
| T |
38414809 |
tattcgattcaaaacatgatttgaaggctgtctttgttatg |
38414849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 9010205 - 9010320
Alignment:
| Q |
172 |
ttgatttaatagcattccatttcatctactacaattgtctttgaaatggtgagatactagttctaaattttaatccatattatttattttttcaatgagt |
271 |
Q |
| |
|
|||||||||| |||| || ||||||||| || | |||||| ||||| |||||| ||||| |||||||||||||||||| |||||| |||||||||| || |
|
|
| T |
9010205 |
ttgatttaattgcataccttttcatctagtatagttgtctctgaaaaggtgagctactacttctaaattttaatccatgatatttaatttttcaatgtgt |
9010304 |
T |
|
| Q |
272 |
ttatcgtctagtattc |
287 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
9010305 |
ttatcgtttagtattc |
9010320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 9010143 - 9010203
Alignment:
| Q |
86 |
tttttagaaaccttagataataacaattaacaccttttctttgttttattcagcatcttta |
146 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
9010143 |
tttttagaaaccttagataataacaatcaacaccttttctttgttttatgcagcatcttta |
9010203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 403 - 462
Target Start/End: Original strand, 9010472 - 9010531
Alignment:
| Q |
403 |
acttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagtt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
9010472 |
acttgcttttaaggtttggttatttgagcatgcaatcatgttattggaataacataagtt |
9010531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 403 - 517
Target Start/End: Complemental strand, 11198009 - 11197895
Alignment:
| Q |
403 |
acttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagtttatgtctaaacaaggataagagtgattgtgaattctttac |
502 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||||| | |
|
|
| T |
11198009 |
acttgcttttacgatttggttatttgagcatgaaaccatgttagtagaataacataagtctatgtctaaacaaggataagagtgattgtaagatctttgc |
11197910 |
T |
|
| Q |
503 |
ttcatttgcattcat |
517 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
11197909 |
ttcttttgcattcat |
11197895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 23950569 - 23950530
Alignment:
| Q |
86 |
tttttagaaaccttagataataacaattaacaccttttct |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23950569 |
tttttagaaaccttagataataacaattaacaccttttct |
23950530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University