View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11750_high_12 (Length: 500)

Name: NF11750_high_12
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11750_high_12
NF11750_high_12
[»] chr2 (8 HSPs)
chr2 (143-480)||(18908505-18908842)
chr2 (152-480)||(18913262-18913590)
chr2 (143-480)||(18920467-18920798)
chr2 (55-143)||(18912334-18912422)
chr2 (13-48)||(18908311-18908346)
chr2 (31-123)||(18919673-18919764)
chr2 (177-217)||(20712293-20712333)
chr2 (177-217)||(21021047-21021087)
[»] chr7 (18 HSPs)
chr7 (155-476)||(19779643-19779961)
chr7 (141-476)||(19887408-19887740)
chr7 (144-480)||(19357947-19358280)
chr7 (155-217)||(19350810-19350872)
chr7 (169-218)||(22524932-22524981)
chr7 (35-146)||(14739006-14739117)
chr7 (170-220)||(21218467-21218517)
chr7 (330-406)||(19722135-19722211)
chr7 (429-479)||(19351051-19351101)
chr7 (14-99)||(19781208-19781296)
chr7 (436-480)||(660836-660880)
chr7 (176-228)||(19645454-19645506)
chr7 (330-396)||(19350976-19351042)
chr7 (177-218)||(22534885-22534926)
chr7 (260-297)||(29453958-29453995)
chr7 (174-218)||(7310970-7311014)
chr7 (163-215)||(15571632-15571684)
chr7 (260-292)||(29895645-29895677)
[»] scaffold0464 (1 HSPs)
scaffold0464 (141-476)||(8102-8434)
[»] chr3 (4 HSPs)
chr3 (329-476)||(12734672-12734819)
chr3 (155-479)||(32578573-32578897)
chr3 (141-218)||(12734505-12734582)
chr3 (436-480)||(3625771-3625815)
[»] chr6 (5 HSPs)
chr6 (141-299)||(14749585-14749746)
chr6 (155-215)||(6921076-6921136)
chr6 (174-215)||(6942712-6942753)
chr6 (451-480)||(14749434-14749463)
chr6 (155-215)||(6934959-6935019)
[»] chr5 (6 HSPs)
chr5 (35-123)||(17587094-17587182)
chr5 (172-218)||(42298374-42298420)
chr5 (439-476)||(29597544-29597581)
chr5 (439-476)||(29647717-29647754)
chr5 (170-223)||(24330613-24330666)
chr5 (439-476)||(29642400-29642437)
[»] scaffold0128 (2 HSPs)
scaffold0128 (169-220)||(25879-25930)
scaffold0128 (172-218)||(4400-4446)
[»] chr8 (1 HSPs)
chr8 (177-218)||(27618724-27618765)
[»] chr4 (5 HSPs)
chr4 (155-218)||(53775098-53775161)
chr4 (172-218)||(2911332-2911378)
chr4 (438-480)||(53774877-53774919)
chr4 (269-298)||(3565936-3565965)
chr4 (436-476)||(53790594-53790634)
[»] chr1 (2 HSPs)
chr1 (170-223)||(21855097-21855150)
chr1 (32-68)||(31442231-31442267)
[»] scaffold0097 (1 HSPs)
scaffold0097 (177-217)||(16132-16172)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 143 - 480
Target Start/End: Original strand, 18908505 - 18908842
Alignment:
Q  143 aaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttc 242  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18908505 aaaatcaattagaacaattaaatcatcgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttg 18908604  T
Q  243 tttgctagttgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgcttgcc 342  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  18908605 tttgctagttgcaatttgttcaactttattatctctccaattataaagaattgcatgtcggcggtgatagccatgaatgaggcctcgttgattgcttgcc 18908704  T
Q  343 attaccagtgtgttgctactctcagaaacatacaatggtaacaagaacaattgagaaccatatgcaagccaatcaccaatgccatgatcaatatgaagat 442  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||| |  ||||||||| | |||||||||||||| ||||||||||||||    
T  18908705 attaccagtgtgttgctactctcagaaacacataatggtaacaagaacaattgagcataatatgcaaggctatcaccaatgccataatcaatatgaagat 18908804  T
Q  443 tttgaaaactaattttgaggaattgagtccaagactct 480  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18908805 tttgaaaactaattttgaggaattgagtccaagactct 18908842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 152 - 480
Target Start/End: Original strand, 18913262 - 18913590
Alignment:
Q  152 tagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttctttgctagt 251  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||  |||| |  ||| ||||    
T  18913262 tagaacaattaaatcattgaagagaaacttactttcaagaggttgataccaagctttcaacataattcttggtatgaaaccacaatatgttattgttagt 18913361  T
Q  252 tgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgcttgccattaccagt 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  18913362 tgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtgatagccatgaatgaggcctcgttgattgcttgccattaccagt 18913461  T
Q  352 gtgttgctactctcagaaacatacaatggtaacaagaacaattgagaaccatatgcaagccaatcaccaatgccatgatcaatatgaagattttgaaaac 451  Q
    ||||||||||||||||||||| | |||||||||||||||||||||| |  ||||||||| | |||||||||||||| |||||||||||||||||||||||    
T  18913462 gtgttgctactctcagaaacacataatggtaacaagaacaattgagcataatatgcaaggctatcaccaatgccataatcaatatgaagattttgaaaac 18913561  T
Q  452 taattttgaggaattgagtccaagactct 480  Q
    |||||||||||||||||||||||||||||    
T  18913562 taattttgaggaattgagtccaagactct 18913590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 143 - 480
Target Start/End: Original strand, 18920467 - 18920798
Alignment:
Q  143 aaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttc 242  Q
    ||||| |||||||| || |||||||||||||| |||||||| |       | ||||| |||||||||||||||||  || |||| ||||||   |||||     
T  18920467 aaaattaattagaataactaaatcattgaagataaacttacat-------ggtgaaatcaagctttcaacataattctttgtatgaaaccacattatttg 18920559  T
Q  243 tttgctagttgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgcttgcc 342  Q
     |||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  18920560 attgtaagttgcaatttgctcaactttattttctctccaattatagagaattgcatgttggcggttatagccatgaatgaggcctcgttgattgcttgcc 18920659  T
Q  343 attaccagtgtgttgctac-tctcagaaacatacaatggtaacaagaacaattgagaaccatatgcaagccaatcaccaatgccatgatcaatatgaaga 441  Q
    |||| |||||||||||||| ||||||||||| | |||||||||||||||||||||| |  ||||||||| | ||||| |||||||| |||||||||||||    
T  18920660 attatcagtgtgttgctacgtctcagaaacacataatggtaacaagaacaattgagcataatatgcaaggctatcactaatgccataatcaatatgaaga 18920759  T
Q  442 ttttgaaaactaattttgaggaattgagtccaagactct 480  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18920760 ttttgaaaactaattttgaggaattgagtccaagactct 18920798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 18912334 - 18912422
Alignment:
Q  55 ttcctttgtgaaaagagtaatagagaaattagcttcaaccttgatgaatataagccagtaccacaagtggcacgacgattatgatatta 143  Q
    |||||| ||||||| | |||||||||||||||||||||||| ||||  || |||||| | ||||| ||| ||| ||| |||||||||||    
T  18912334 ttccttcgtgaaaataataatagagaaattagcttcaacctcgatgcctaaaagccaatgccacaggtgacaccacggttatgatatta 18912422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 18908311 - 18908346
Alignment:
Q  13 cacagataaaatcaatagataattctcaaaagtgca 48  Q
    ||||||||||||||||||||||||||||||||||||    
T  18908311 cacagataaaatcaatagataattctcaaaagtgca 18908346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 18919673 - 18919764
Alignment:
Q  31 ataattctcaaaagtgcagctacattcctttgtgaaaagagtaatagagaaattagcttcaaccttgatgaatataagccagtaccacaagtg 123  Q
    |||||| ||||||||||||  |  ||||||||| | || | |||||||||| |||||||||||||||| |  || ||||||||||||||||||    
T  18919673 ataattgtcaaaagtgcagtcatgttcctttgtaagaaaa-taatagagaagttagcttcaaccttgacgcctaaaagccagtaccacaagtg 18919764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 20712293 - 20712333
Alignment:
Q  177 aacttactttcaagaggttgaaaccaagctttcaacataat 217  Q
    ||||||||||||| | ||||||||||||||||| |||||||    
T  20712293 aacttactttcaacaagttgaaaccaagctttcgacataat 20712333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 21021047 - 21021087
Alignment:
Q  177 aacttactttcaagaggttgaaaccaagctttcaacataat 217  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  21021047 aacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 155 - 476
Target Start/End: Complemental strand, 19779961 - 19779643
Alignment:
Q  155 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttctttgcta---gt 251  Q
    |||| ||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||||||  ||||||| |||  |   |     
T  19779961 aacagttaaatcattgaagagaaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcaacaga 19779862  T
Q  252 tgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgcttgccattaccagt 351  Q
    || ||||||||| ||  | ||||||||||||||||||||||||||||| | |   ||||| ||||    | |||||  |||||||||||||||||  |||    
T  19779861 tgtaatttgctctaccgttttatctctccaattatagagaattgcatggttg---tcataaccatc---gtggccttcttgattgcttgccattataagt 19779768  T
Q  352 gtgttgctactctcagaaacatacaatggtaacaagaacaattgagaaccatatgcaagccaatcaccaatgccatgatcaatatgaagattttgaaaac 451  Q
    ||||||  |||||||||||  ||||||||  ||||  ||||||||||||||||  | ||  |||||| |||||||| |||||| ||||| |  |||||||    
T  19779767 gtgttgtcactctcagaaaggtacaatggatacaaatacaattgagaaccataatccagtgaatcactaatgccataatcaatttgaaggtcctgaaaac 19779668  T
Q  452 taattttgaggaattgagtccaaga 476  Q
    |||||||||||||||||||||||||    
T  19779667 taattttgaggaattgagtccaaga 19779643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 141 - 476
Target Start/End: Original strand, 19887408 - 19887740
Alignment:
Q  141 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatt 240  Q
    ||||||| ||||  |||||||||||||||||| | ||||||||| |||| || ||||||| ||||||||||||||||| ||||||| ||||||  |||||    
T  19887408 ttaaaattaattcaaacaattaaatcattgaatagaaacttactctcaaaagattgaaactaagctttcaacataatccttggtatgaaaccacaatatt 19887507  T
Q  241 tctttgcta---gttgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgc 337  Q
    || |||  |   | || ||||||||| ||  | ||||||||||| ||||||| ||||||||| | |   ||||| ||||    |  |||| |||||||||    
T  19887508 tcattgtcaacagatgtaatttgctctaccgttttatctctccagttatagataattgcatggttg---tcataaccatc---gtagccttgttgattgc 19887601  T
Q  338 ttgccattaccagtgtgttgctactctcagaaacatacaatggtaacaagaacaattgagaaccatatgcaagccaatcaccaatgccatgatcaatatg 437  Q
    |||||||||  |||||||||  |||||||||||  || |||||  ||||  ||||||||||||||||  | ||  |||||| |||||||| |||||| ||    
T  19887602 ttgccattataagtgtgttgtcactctcagaaaggtaaaatggatacaaatacaattgagaaccatagtccagtgaatcactaatgccataatcaatttg 19887701  T
Q  438 aagattttgaaaactaattttgaggaattgagtccaaga 476  Q
    ||| |  ||||||||||||||||||||||||||||||||    
T  19887702 aaggtcctgaaaactaattttgaggaattgagtccaaga 19887740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 144 - 480
Target Start/End: Complemental strand, 19358280 - 19357947
Alignment:
Q  144 aaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttct 243  Q
    |||| |||| ||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||  ||||||      
T  19358280 aaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggtataaaaccaccatatttta 19358181  T
Q  244 ttgct---agttgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgcttg 340  Q
    ||| |   || || | | ||||  ||| | ||||||||||||||||||||||||||||||||   |||| |  ||||      ||||  ||| |||| ||    
T  19358180 ttgttgacagatgtagtatgctttactcttttatctctccaattatagagaattgcatgttgttcgtcaaaatcata------gccttcttgcttgcatg 19358087  T
Q  341 ccattaccagtgtgttgctactctcagaaacatacaatggtaacaagaacaattgagaaccatatgcaagccaatcaccaatgccatgatcaatatgaag 440  Q
    |||||| |||||||| | |||||||||||||| |||||||||| | ||||| |||     || ||     |||||||| | |||||| |||||| |||||    
T  19358086 ccattatcagtgtgtcgttactctcagaaacacacaatggtaataggaacatttgctcctcaaatctctcccaatcactactgccataatcaatttgaag 19357987  T
Q  441 attttgaaaactaattttgaggaattgagtccaagactct 480  Q
    ||  |||||||||||||| | |||||||||||||||||||    
T  19357986 atcctgaaaactaatttttaagaattgagtccaagactct 19357947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 19350810 - 19350872
Alignment:
Q  155 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataat 217  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  19350810 aacaattaaatcattaaagagaaacttactttcaagaggttgaaactaagctttcaacataat 19350872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 22524932 - 22524981
Alignment:
Q  169 tgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 218  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  22524932 tgaagaagaacttactttcaagaagttgaaaccaagctttcaacataatc 22524981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 14739117 - 14739006
Alignment:
Q  35 ttctcaaaagtgcagctacattcctttgtgaaaagagtaatagagaaattagcttcaaccttgatgaatataagccagtaccacaagtggcacgacgatt 134  Q
    |||||||||||||||| |||||| ||| |||||||| ||||| |||||||||||| || ||| |||  || |||| ||||||| ||||| ||| |   ||    
T  14739117 ttctcaaaagtgcagcaacattcttttttgaaaagaataataaagaaattagcttgaaactttatgcctaaaagctagtaccataagtgacacaattgtt 14739018  T
Q  135 atgatattaaaa 146  Q
    ||||||||||||    
T  14739017 atgatattaaaa 14739006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 21218467 - 21218517
Alignment:
Q  170 gaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcat 220  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  21218467 gaagaagaacttactttcaagaagttgaaaccaagctttcgacataatcat 21218517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 19722211 - 19722135
Alignment:
Q  330 ttgattgcttgccattaccagtgtgttgctactctcagaaacatacaatggtaacaagaacaattgagaaccatatg 406  Q
    |||||||||||||||||  ||||| || |||||||| |||||  ||||||| |||| ||||||||||||| ||||||    
T  19722211 ttgattgcttgccattattagtgtattcctactctcggaaacgcacaatgggaacaggaacaattgagaatcatatg 19722135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 479
Target Start/End: Original strand, 19351051 - 19351101
Alignment:
Q  429 atcaatatgaagattttgaaaactaattttgaggaattgagtccaagactc 479  Q
    |||||| |||||||  ||||||||||||||||||||| |||||||||||||    
T  19351051 atcaatgtgaagatcctgaaaactaattttgaggaatggagtccaagactc 19351101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 19781296 - 19781208
Alignment:
Q  14 acagataaaatcaatagataattctcaaaagtgcagctacattcctttgtg---aaaagagtaatagagaaattagcttcaaccttgat 99  Q
    ||||| ||||| |||| |||||||||||||||| ||| |||||||||| ||   |||| | ||||| ||||||||||||||||| ||||    
T  19781296 acagaaaaaatgaatatataattctcaaaagtgaagccacattcctttctgaaaaaaataataataaagaaattagcttcaaccgtgat 19781208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 660836 - 660880
Alignment:
Q  436 tgaagattttgaaaactaattttgaggaattgagtccaagactct 480  Q
    |||||||| ||| |||||||||| |||||||||||||||||||||    
T  660836 tgaagattatgataactaattttaaggaattgagtccaagactct 660880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 19645454 - 19645506
Alignment:
Q  176 aaacttactttcaagaggttgaaaccaagctttcaacataatcattggtatta 228  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||| ||||    
T  19645454 aaacttactttcaacaagttgaaaccaaactttcaacataatccttggaatta 19645506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 19350976 - 19351042
Alignment:
Q  330 ttgattgcttgccattaccagtgtgttgctactctcagaaacatacaatggtaacaagaacaattga 396  Q
    |||||||||| ||||||  | ||||| |||| ||| ||||||| |||||||||||| ||||||||||    
T  19350976 ttgattgcttaccattataattgtgtcgctaatcttagaaacacacaatggtaacacgaacaattga 19351042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 22534926 - 22534885
Alignment:
Q  177 aacttactttcaagaggttgaaaccaagctttcaacataatc 218  Q
    ||||||||||||||| | ||||||||||||||| ||||||||    
T  22534926 aacttactttcaagaaggtgaaaccaagctttcgacataatc 22534885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 29453958 - 29453995
Alignment:
Q  260 gctcaactttattatctctccaattatagagaattgca 297  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  29453958 gctctactttattatctctccagttatagagaattgca 29453995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 7310970 - 7311014
Alignment:
Q  174 aaaaacttactttcaagaggttgaaaccaagctttcaacataatc 218  Q
    |||||||||||||||| ||||||||||||  ||||| ||||||||    
T  7310970 aaaaacttactttcaataggttgaaaccagactttcgacataatc 7311014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 15571632 - 15571684
Alignment:
Q  163 aatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 215  Q
    |||||| ||| ||||||||||||||| || || || |||||||||||||||||    
T  15571632 aatcatcgaacaaaaacttactttcaggaagtcgataccaagctttcaacata 15571684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 29895677 - 29895645
Alignment:
Q  260 gctcaactttattatctctccaattatagagaa 292  Q
    |||| ||||||||||||||||||||||||||||    
T  29895677 gctctactttattatctctccaattatagagaa 29895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 141 - 476
Target Start/End: Complemental strand, 8434 - 8102
Alignment:
Q  141 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatt 240  Q
    ||||||| ||||||||| ||||||| ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||  |||| | ||||||   ||||    
T  8434 ttaaaattaattagaactattaaattattaaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacattatt 8335  T
Q  241 tctttgcta---gttgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgc 337  Q
     | |||  |   | |  ||||||||||||  | ||||||||||||||||||| |||||||||       ||||  |||||      |||| |||||||||    
T  8334 acattgtcaagagatttaatttgctcaacccttttatctctccaattatagataattgcatggcttttatcatcaccata------gccttgttgattgc 8241  T
Q  338 ttgccattaccagtgtgttgctactctcagaaacatacaatggtaacaagaacaattgagaaccatatgcaagccaatcaccaatgccatgatcaatatg 437  Q
    |||||||||  |||||||||  ||||||||| |  ||||| || |||||||||||||||||||||||  | ||  |||||| |||||||| |||||| ||    
T  8240 ttgccattataagtgtgttgtcactctcagagaggtacaacggaaacaagaacaattgagaaccatactctagtgaatcactaatgccataatcaatttg 8141  T
Q  438 aagattttgaaaactaattttgaggaattgagtccaaga 476  Q
    |||||  ||||||||||||||||| |||||| |||||||    
T  8140 aagatcctgaaaactaattttgagaaattgaatccaaga 8102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 329 - 476
Target Start/End: Original strand, 12734672 - 12734819
Alignment:
Q  329 gttgattgcttgccattaccagtgtgttgctactctcagaaacatacaatggtaacaagaacaattgagaaccatatgcaagccaatcaccaatgccatg 428  Q
    ||||||||||||||||||  |||||||||  |||||||||||  ||||| || |||||||||||||||||||||||| | ||  ||||||  |||||||     
T  12734672 gttgattgcttgccattataagtgtgttgtcactctcagaaaggtacaacggaaacaagaacaattgagaaccatattccagtaaatcactgatgccata 12734771  T
Q  429 atcaatatgaagattttgaaaactaattttgaggaattgagtccaaga 476  Q
    |||||| |||||||  ||||||||||||||||| |||||| |||||||    
T  12734772 atcaatttgaagatcctgaaaactaattttgagaaattgaatccaaga 12734819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 155 - 479
Target Start/End: Original strand, 32578573 - 32578897
Alignment:
Q  155 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttctttgcta---gt 251  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||  ||||||||||||||| | ||||||| ||||||  ||||||| | |  |   |     
T  32578573 aacaattaaatcattgaagagaaacttactctcaaaaggttgaaaataagctttcaacataagccttggtatgaaaccacaatatttcatcgtcaacaga 32578672  T
Q  252 tgcaatttgctcaactttattatctctccaattatagagaattgcatgttggcggtcatagccataaatgaggcctcgttgattgcttgccattaccagt 351  Q
    || ||||||||||||  | |||| |||||||| ||||||||||||||| | |   | |  | ||||      |||| ||||||||||||||||||  |||    
T  32578673 tgtaatttgctcaacccttttatttctccaatcatagagaattgcatggttgtcatgaccgtcata------gccttgttgattgcttgccattataagt 32578766  T
Q  352 gtgttgctactctcagaaacatacaatggtaacaagaacaattgagaaccat---atgcaagccaatcaccaatgccatgatcaatatgaagattttgaa 448  Q
    |||  |  |||||| ||||  ||||||||  |||||||||||||||||||||   || | ||  |||||| |||||||| |||||| ||||| |  ||||    
T  32578767 gtgccgtcactctcggaaaggtacaatggatacaagaacaattgagaaccatcatattccagtgaatcactaatgccataatcaatttgaaggtcctgaa 32578866  T
Q  449 aactaattttgaggaattgagtccaagactc 479  Q
    ||||||| |||||||||||||||||||||||    
T  32578867 aactaatcttgaggaattgagtccaagactc 32578897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 12734505 - 12734582
Alignment:
Q  141 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 218  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  12734505 ttaaaattaattagaactattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatc 12734582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 480
Target Start/End: Complemental strand, 3625815 - 3625771
Alignment:
Q  436 tgaagattttgaaaactaattttgaggaattgagtccaagactct 480  Q
    |||||||||||| |||||||||| || ||||||||||||||||||    
T  3625815 tgaagattttgataactaattttaagaaattgagtccaagactct 3625771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 141 - 299
Target Start/End: Complemental strand, 14749746 - 14749585
Alignment:
Q  141 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatt 240  Q
    ||||||| ||||  || ||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||| |||| ||||||| ||||||  |||||    
T  14749746 ttaaaattaattcaaaaaattaaatcattgaagagaaacttactttcaagagcttgaaattaagctttcaacaaaatccttggtataaaaccacaatatt 14749647  T
Q  241 tctttg---ctagttgcaatttgctcaactttattatctctccaattatagagaattgcatg 299  Q
    || |||   | || || |||||| |||||  | |||||| |||||||||||| |||||||||    
T  14749646 tcattgtcaccagatgtaatttgttcaacccttttatctatccaattatagataattgcatg 14749585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 6921076 - 6921136
Alignment:
Q  155 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 215  Q
    ||||| |||||||| ||| |||||||||||||||||| || || |||||||||||||||||    
T  6921076 aacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 6921136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 6942712 - 6942753
Alignment:
Q  174 aaaaacttactttcaagaggttgaaaccaagctttcaacata 215  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  6942712 aaaaacttactttcaagaagttgataccaagctttcaacata 6942753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 14749463 - 14749434
Alignment:
Q  451 ctaattttgaggaattgagtccaagactct 480  Q
    ||||||||||||||||||||||||||||||    
T  14749463 ctaattttgaggaattgagtccaagactct 14749434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 6934959 - 6935019
Alignment:
Q  155 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 215  Q
    ||||| |||||||||||||| ||| |||| ||||||| || || ||||| |||||||||||    
T  6934959 aacaagtaaatcattgaagagaaaattaccttcaagaagtcgataccaaactttcaacata 6935019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 17587094 - 17587182
Alignment:
Q  35 ttctcaaaagtgcagctacattcctttgtgaaaagagtaatagagaaattagcttcaaccttgatgaatataagccagtaccacaagtg 123  Q
    |||||||||||||||| |||||| ||| |||||||||||||| |||||||||||| || |||||||  || |||| ||||||| |||||    
T  17587094 ttctcaaaagtgcagcaacattcttttttgaaaagagtaataaagaaattagcttgaaacttgatgcctaaaagctagtaccataagtg 17587182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 42298420 - 42298374
Alignment:
Q  172 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 218  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  42298420 agaagaacttactttcaagaagttgaaaccaagctttcgacataatc 42298374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 476
Target Start/End: Original strand, 29597544 - 29597581
Alignment:
Q  439 agattttgaaaactaattttgaggaattgagtccaaga 476  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29597544 agattttgaaaactaattttaaggaattgagtccaaga 29597581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 29647754 - 29647717
Alignment:
Q  439 agattttgaaaactaattttgaggaattgagtccaaga 476  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29647754 agattttgaaaactaattttaaggaattgagtccaaga 29647717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 24330613 - 24330666
Alignment:
Q  170 gaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattgg 223  Q
    ||||| |||||||||||||| |  ||| ||| ||||||||||||||||||||||    
T  24330613 gaagagaaacttactttcaaaaacttggaactaagctttcaacataatcattgg 24330666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 29642437 - 29642400
Alignment:
Q  439 agattttgaaaactaattttgaggaattgagtccaaga 476  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  29642437 agattctgaaaactaattttaaggaattgagtccaaga 29642400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 25930 - 25879
Alignment:
Q  169 tgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcat 220  Q
    ||||||||||||||||||||| || || ||||||||||||| ||||||||||    
T  25930 tgaagaaaaacttactttcaacagattaaaaccaagctttcgacataatcat 25879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 4446 - 4400
Alignment:
Q  172 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 218  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  4446 agaagaacttactttcaagaagttgaaaccaagctttcgacataatc 4400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 27618765 - 27618724
Alignment:
Q  177 aacttactttcaagaggttgaaaccaagctttcaacataatc 218  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  27618765 aacttactttcaagaaattgaaaccaagctttcaacataatc 27618724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 53775161 - 53775098
Alignment:
Q  155 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 218  Q
    ||||| |||||| | |||||  ||||||||||||| | ||||| ||||||||||||||||||||    
T  53775161 aacaagtaaatcttggaagaggaacttactttcaacacgttgataccaagctttcaacataatc 53775098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 2911378 - 2911332
Alignment:
Q  172 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 218  Q
    |||| ||||||||||||||| ||||| ||||||||||| ||||||||    
T  2911378 agaagaacttactttcaagaagttgataccaagctttctacataatc 2911332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 480
Target Start/End: Complemental strand, 53774919 - 53774877
Alignment:
Q  438 aagattttgaaaactaattttgaggaattgagtccaagactct 480  Q
    |||||| ||| |||||||||| |||||||||||||||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactct 53774877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 298
Target Start/End: Complemental strand, 3565965 - 3565936
Alignment:
Q  269 tattatctctccaattatagagaattgcat 298  Q
    ||||||||||||||||||||||||||||||    
T  3565965 tattatctctccaattatagagaattgcat 3565936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 476
Target Start/End: Complemental strand, 53790634 - 53790594
Alignment:
Q  436 tgaagattttgaaaactaattttgaggaattgagtccaaga 476  Q
    |||||||| |||||||||||||| || ||||||||||||||    
T  53790634 tgaagattctgaaaactaattttaagaaattgagtccaaga 53790594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 21855097 - 21855150
Alignment:
Q  170 gaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattgg 223  Q
    ||||| |||||||||||||| |  ||| ||| ||||||||||||||||||||||    
T  21855097 gaagagaaacttactttcaaaaacttggaactaagctttcaacataatcattgg 21855150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 31442231 - 31442267
Alignment:
Q  32 taattctcaaaagtgcagctacattcctttgtgaaaa 68  Q
    ||||||||||||||||||||| || ||||||||||||    
T  31442231 taattctcaaaagtgcagctatatccctttgtgaaaa 31442267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 16132 - 16172
Alignment:
Q  177 aacttactttcaagaggttgaaaccaagctttcaacataat 217  Q
    ||||||||||||| | ||||||||||||||||| |||||||    
T  16132 aacttactttcaacaagttgaaaccaagctttcgacataat 16172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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