View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11750_high_2 (Length: 890)

Name: NF11750_high_2
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11750_high_2
NF11750_high_2
[»] chr4 (2 HSPs)
chr4 (11-874)||(20178947-20179811)
chr4 (425-479)||(49652971-49653025)


Alignment Details
Target: chr4 (Bit Score: 769; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 11 - 874
Target Start/End: Original strand, 20178947 - 20179811
Alignment:
Q  11 cagagaaacgaaccggaacggagttaatgactcgggttgttgtggatttgtatgaaaatgaaccggtggttcggtctaaaagaggaaggaaccaagcttt 110  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20178947 cagagaaacgaaccggaacggagttaatggctcgggttgttgtggatttgtatgaaaatgaaccggtggttcggtctaaaagaggaaggaaccaagcttt 20179046  T
Q  111 accgtgccggtttagagactcggtgattgaaccgttgaaacgcaaggatcggaaactgagattgtcgtctactactactaatgctaagaaacgaagttac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20179047 accgtgccggtttagagactcggtgattgaaccgttgaaacgcaaggatcggaaactgagattgtcgtctactactactaatgctaagaaacgaagttac 20179146  T
Q  211 aacgtgaaacggtaaaaagtttgtttt-ttacttttggtgaatgaataaagtttgctaattttagttagtattttcatttatgtttgtttgaggtgtttg 309  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||| |||||||||||||    
T  20179147 aacgtgaaacggtaaaaagtttgtttttttacttttggtgaatgaataaagtttgctaattttagttagtgtttttgtttacgtttatttgaggtgtttg 20179246  T
Q  310 atcaagacgacgtgtcgtcggattcaagagatgtttattgattattacatacatttgaaacacggatacaaacaccgatatcagatatcagatacgacac 409  Q
    ||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20179247 atcaagacgacgtatcgtctgagttaagagatgtttattgattattacatacatttgaaacacggatacaaacaccgatatcagatatcagatacgacac 20179346  T
Q  410 tgacacgttaacgtaactaatagtttaagaaaatcgtataattcagtataattatgtgttaatgtcgtgttagatacgacacgtgtccgacgtcggaaca 509  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| || | |||||||||||||||||||||| ||||||    
T  20179347 tgacacgttaacgtaattaatagtttaagaaaatcatataattcagtataattatgtgttgatgttgtatcagatacgacacgtgtccgacgttggaaca 20179446  T
Q  510 tgtctaatttaaaaagtctttatgcttcatagttaacttatagggagagaatatgttatgtataagattttggaattggaattagtgttaattaatcaaa 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20179447 tgtctaatttaaaaagtctttatgcttcatagttaacttatagggagagaatatgttatgtataagattttggatttggaattagtgttaattaatcaaa 20179546  T
Q  610 caattctatctaactctgataagatagataaatagtatagcttgtttactctctcattcttatctcttttgtcttggcaatgtttatggtagttattcaa 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20179547 caattctatctaactctgataagatagataaatagtatagcttgtttactctctcattcttatctcttttgtcttggcaatgtttatagtagttattcaa 20179646  T
Q  710 tgacgattgaagttgatttatttggcaaagtggaaagggacaatttgaaagaatatgatttggatgttgtctcaatattttaattgcctatcatgatagc 809  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20179647 tgacgatggaagttgatttatttggcaaagtggaaagggacaatttgaaagaatatgatttgaatgttgtctcaatattttaattgcctatcatgatagc 20179746  T
Q  810 attttatgataaagggaaattaatacaaaagtaggtttaatgaatgttgcatttcttttaaatag 874  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20179747 attttatgataaagggaaattaatacaaaagtaggtttaatgaatgctgcatttcttttaaatag 20179811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 479
Target Start/End: Complemental strand, 49653025 - 49652971
Alignment:
Q  425 actaatagtttaagaaaatcgtataattcagtataattatgtgttaatgtcgtgt 479  Q
    ||||||| ||||||||||||  |||||||||||||||||| ||||  ||||||||    
T  49653025 actaataatttaagaaaatcagataattcagtataattatatgttggtgtcgtgt 49652971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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