View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_high_24 (Length: 348)
Name: NF11750_high_24
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_high_24 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 333
Target Start/End: Complemental strand, 22956 - 22644
Alignment:
| Q |
21 |
gttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcgcagaagcttccagagaagaaaattccttctacacaagcaaatgcaacaattcttt |
120 |
Q |
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||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22956 |
gttaaccctggcattaaaccgcgctttttcaaccagaaaatcgcgcaaaagcttccggagaagaaaattccttctacacaagcaaatgcaacgattcttt |
22857 |
T |
|
| Q |
121 |
cagcaaaagaatcgcttgaatcgatccatttcatagcccaatcagcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttc |
220 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22856 |
cagcaaaagaatcgcttgaatcaatccatttcattgcccaatcagcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttc |
22757 |
T |
|
| Q |
221 |
agcagaatcgcttatatatgtttcaatgagaagggagtacatctcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggag |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22756 |
agcagaatcgcttatatatgtttcaatgagaagggagtacatctcagaatggatgttttcaattgcaatttggaaaccatagaaggcacgtgcttcggag |
22657 |
T |
|
| Q |
321 |
atttgaacttctt |
333 |
Q |
| |
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||||| ||||||| |
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| T |
22656 |
atttggacttctt |
22644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 333
Target Start/End: Original strand, 10197132 - 10197444
Alignment:
| Q |
21 |
gttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcgcagaagcttccagagaagaaaattccttctacacaagcaaatgcaacaattcttt |
120 |
Q |
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||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10197132 |
gttaaccctggcattaaaccgcgctttttcaaccagaaaatcgcgcaaaagcttccggagaagaaaattccttctacacaagcaaatgcaacgattcttt |
10197231 |
T |
|
| Q |
121 |
cagcaaaagaatcgcttgaatcgatccatttcatagcccaatcagcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttc |
220 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197232 |
cagcaaaagaatcgcttgaatcaatccatttcattgcccaatcagcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttc |
10197331 |
T |
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| Q |
221 |
agcagaatcgcttatatatgtttcaatgagaagggagtacatctcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggag |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10197332 |
agcagaatcgcttatatatgtttcaatgagaagggagtacatctcagaatggatgttttcaattgcaatttggaaaccatagaaggcacgtgcttcggag |
10197431 |
T |
|
| Q |
321 |
atttgaacttctt |
333 |
Q |
| |
|
||||| ||||||| |
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|
| T |
10197432 |
atttggacttctt |
10197444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 19457470 - 19457167
Alignment:
| Q |
18 |
aaggttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcgcagaagcttccagagaagaaaattccttctacacaagcaaatgcaacaattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||| |||| |
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| T |
19457470 |
aaggttaatcccggcattaaaccgcgctttttcaaccagaaaatcgcacagaagcttccggagaaaaagattccttcaacacaagcaaacgcaacgattc |
19457371 |
T |
|
| Q |
118 |
tttcagcaaaagaatcgcttgaatcgatccatttcatagcccaatcagcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattctt |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19457370 |
tttctgcaaaagaatcgcttgaatcgatccatttcatcgcccaatcagctttcttcgcgatacatggaattgtttcaattgcatgaaataagcgattctt |
19457271 |
T |
|
| Q |
218 |
ttcagcagaatcgcttatatatgtttcaatgagaagggagtacatctcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcg |
317 |
Q |
| |
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|||||| |||||||||||||| ||||| | |||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19457270 |
ttcagcggaatcgcttatatacgtttcgaggagaagagaatacatctcagagtggatgttttcaattgcaatctggaaaccgtagaaggcacgtgcttca |
19457171 |
T |
|
| Q |
318 |
gaga |
321 |
Q |
| |
|
|||| |
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|
| T |
19457170 |
gaga |
19457167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 333
Target Start/End: Original strand, 25025624 - 25025936
Alignment:
| Q |
21 |
gttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcgcagaagcttccagagaagaaaattccttctacacaagcaaatgcaacaattcttt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||| ||||||| |
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| T |
25025624 |
gttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcacagaagcttccggagaagaaaattccttcaacacaagcgaaagcaacgattcttt |
25025723 |
T |
|
| Q |
121 |
cagcaaaagaatcgcttgaatcgatccatttcatagcccaatcagcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttc |
220 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |||||||||||| || || || ||||| |||||||| |||||||| |||||||| ||||||||||| |
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| T |
25025724 |
ctgcaaaagaatcgcttgaatcgatccatttcaaagcccaatcagctttcttagcaatacacggaattgtgtcaattgcgtgaaataatcgattcttttc |
25025823 |
T |
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| Q |
221 |
agcagaatcgcttatatatgtttcaatgagaagggagtacatctcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggag |
320 |
Q |
| |
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|||||||||||||||||| ||||| | |||||| || |||||||| || |||||||||||||| || || || || || ||||| ||||| ||||| ||| |
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| T |
25025824 |
agcagaatcgcttatatacgtttcgaggagaagagaatacatctctgagtggatgttttcaatagcgatttgaaacccgtagaaagcacgcgcttcagag |
25025923 |
T |
|
| Q |
321 |
atttgaacttctt |
333 |
Q |
| |
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||||||||||||| |
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|
| T |
25025924 |
atttgaacttctt |
25025936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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