View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_high_37 (Length: 239)
Name: NF11750_high_37
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_high_37 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 24009929 - 24009707
Alignment:
| Q |
17 |
agttggaacactcttcggatacagacgtgggcatgtacattttgcatttcaaaaggatccaacttcccaagaagcctttttgattgagcttgcaacaccg |
116 |
Q |
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| T |
24009929 |
agttggaacactcttcggatacagacgtgggcatgtacattttgcatttcaaaaggatccaacttcccaagaagcctttttgattgagcttgcaacaccg |
24009830 |
T |
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| Q |
117 |
atcagtggtttggttcgagaaatggcatctgggtcagtaagaattgctctggaatgtgacaaggcgaaagaagcagagaagaaaaccttaaggttgcttg |
216 |
Q |
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| T |
24009829 |
atcagcggcttggttcgagaaatggcatctgggtcagtaagaattgctctggaatgtgacaaggcgaaagaagctgagaagaaaaccttaaggttgcttg |
24009730 |
T |
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| Q |
217 |
aagagcctcagtggaggacatat |
239 |
Q |
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| T |
24009729 |
aagagcctcagtggaggacatat |
24009707 |
T |
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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 46089434 - 46089591
Alignment:
| Q |
18 |
gttggaacactcttcggatacagacgtgggcatgtacattttgcatttcaaaaggatccaacttcccaagaagcctttttgattgagcttgcaacaccga |
117 |
Q |
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| T |
46089434 |
gttggaaccctctttggttaccgtcgtggccatgttcatttcgcttttcagaaagaccctacttcacaaccagcttttctcattgagcttgcaacaccaa |
46089533 |
T |
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| Q |
118 |
tcagtggtttggttcgagaaatggcatctgggtcagtaagaattgctctggaatgtga |
175 |
Q |
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| T |
46089534 |
ttagtggtttggttcgtgaaatggcttctgggttggtacgaattgctcttgaatgtga |
46089591 |
T |
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