View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_high_39 (Length: 219)
Name: NF11750_high_39
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_high_39 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 40457921 - 40457714
Alignment:
| Q |
12 |
atagggcgtgtagggggtgttaatggtgtatattcaaatggtggaggcctagggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtg |
111 |
Q |
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| T |
40457921 |
atagggcgtgtggagggtgttaatggcgtgtattcaaatggtggaggtctagggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtg |
40457822 |
T |
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| Q |
112 |
gtgatgaagatggctgtgagagtgtaagccaagatgaatccacatgcttcttcatcatctttaaattaaagaatgtttgtgtatcagcagagagtggtgg |
211 |
Q |
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| T |
40457821 |
gtgatgaagatggctgtgagagtgtaagccaagatggatccacatgcttcttcatcatctttaaattaaagaatgtttgtgtatcagcagagagtggtgg |
40457722 |
T |
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| Q |
212 |
tgatgaag |
219 |
Q |
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|||||||| |
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| T |
40457721 |
tgatgaag |
40457714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 40280429 - 40280622
Alignment:
| Q |
12 |
atagggcgtgtagggggtgttaatggtgtatattcaaatggtggaggcctagggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtg |
111 |
Q |
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| T |
40280429 |
atagggcgtgtggagggtgttaatggcgtgtattcaaatggtggaggcctagggggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtg |
40280528 |
T |
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| Q |
112 |
gtgatgaagatggctgtgagagtgtaagccaagatgaatccacatgcttcttcatcatctttaaattaaagaatgtttgtgtatcagcagagag |
205 |
Q |
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| T |
40280529 |
gtgatgaagatggctgtgagagtgtaagccatgatggatccacatgcttcttcatcttctttaaattcaagattgtttgtgtatcagcagagag |
40280622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 40280654 - 40280794
Alignment:
| Q |
65 |
gggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtggtgatgaagatggctgtgagagtgtaagccaagatgaatccacatgcttcttc |
164 |
Q |
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||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
40280654 |
gggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatggctgtgagagtgtaagccatgatggatccacatgcttcttc |
40280753 |
T |
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| Q |
165 |
atcatctttaaattaaagaatgtttgtgtatcagcagagag |
205 |
Q |
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| T |
40280754 |
atcttctttaaattcaagattgtttgtgtatcagcagagag |
40280794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 40285424 - 40285483
Alignment:
| Q |
64 |
ggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtggtgatgaagatg |
123 |
Q |
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| T |
40285424 |
ggggtgttgatggtgtgtattcagatggtaaatgcttagggagtggtggtgatgaagatg |
40285483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 40280807 - 40280853
Alignment:
| Q |
29 |
tgttaatggtgtatattcaaatggtggaggcctagggggtgatgatg |
75 |
Q |
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| T |
40280807 |
tgttaatggtgtgtattcagatggtggaggcctaggtggcgatgatg |
40280853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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