View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11750_high_7 (Length: 652)

Name: NF11750_high_7
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11750_high_7
NF11750_high_7
[»] chr1 (1 HSPs)
chr1 (1-639)||(38723014-38723647)


Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 38723647 - 38723014
Alignment:
Q  1 cttttccataatggtctttctctggtaattcttgacgttccatgttatccatttgtcaaaatcagactccatttctgatctgcagctgaagcataaacat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38723647 cttttccataatggtctttctctggtaattcttgacgttccatgatatccatttgtcaaaatcagactccatttctgatctgcagctgaagcataaacat 38723548  T
Q  101 gaaagaaccaacaaaataaggtggaaacaccttcttggaaccataatgctaatattagtatataatattactatgcgatttgtttcaagacagtgcacta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38723547 gaaagaaccaacaaaataaggtggaaacaccttcttggaaccataatgctaatattagtatataatattactatacgatttgtttcaagacagtgcacta 38723448  T
Q  201 gaatatatataaggtcatacacacataaatatatagatacacattaaatgttaatactcattgccatttaccaaactaaccctcatttataagtaaatag 300  Q
    |||||||    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38723447 gaatata----aggtcatacacacataaatatatagatacacattaaatgttaatgctcattgccatttaccaaactaaccctcatttataagtaaatag 38723352  T
Q  301 agacagacttagtatatgttctgacgcatgacagtgttgaagggtatgctcattttattttttctactctttgaacaaaattagtagatagaattaaata 400  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38723351 agacaaact-agtatatgttctgacgcatgacagtgttgaagggtatgctcattttattttttctactctttgaacaaaattagtagatagaattaaata 38723253  T
Q  401 taagtgggcactaattttttgtggaactatatcaggaactggagtagttgtattatgggaccccaatttcaaactatgatcaaataaggtgtaatcaatt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38723252 taagtgggcactaattttttgtggaactatatcaggaactggagtaattgtattatgggaccccaatttcaaactatgatcaaataaggtgtaatcaatt 38723153  T
Q  501 aatgtacatatcagattgaagataatccattgacattggggatggattttggcacagaaggaagaaaattggttaagttcatacctgtaatccattttca 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38723152 aatgtacatatcagattgaagataatccattgacattggggatggattttggcacagaaggaagaaaattggttaagttcatagctgtaatccattttca 38723053  T
Q  601 aaatgctcaaatttggtgtagtggtcactcaggtctgtg 639  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38723052 aaatgctcaaatttggtgtagtggtcactcaggtctgtg 38723014  T

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