View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_11 (Length: 522)
Name: NF11750_low_11
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Original strand, 39851969 - 39852445
Alignment:
| Q |
19 |
aaatgacctaaggtaaatcgataaagaacataaattgaccttgactaaaaataaataaataacataaattgactagattggtagaaaggtgcaacaaaat |
118 |
Q |
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| T |
39851969 |
aaatgacctaaggtaaatcgataaagaacataaattgaccttgactaaaaataaataaataacataaattgactagattggtagaaaggtgcaacaaaat |
39852068 |
T |
|
| Q |
119 |
gtaaaaactgtcaaaaatcaagaattttgagctgtaaatgcttgaaagttaaaagaattgaaattatattgtctgaaagtaaagtgcaaaaatgtgaaag |
218 |
Q |
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| T |
39852069 |
gtaaaaactgtcaaaaatcaagaattt-gagctgtaaatgcttgaaagttaaaagaattgaaattaaattgtctgaaagtaaagtgcaaaaatgtgaaag |
39852167 |
T |
|
| Q |
219 |
tttaattggaaatgttatattttgaatgtttaaatggaatttatggaatacatacttagatcatcatagcttgaatatgttttcgattaagtacctgact |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39852168 |
gttaattggaaatgttatattttgaatgtttaaatggaatttatggaatacatacttagatcatcatagcttgaatatgttttcgattaagtacctgact |
39852267 |
T |
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| Q |
319 |
gaccttacttacatttttgaactaatatttaaaagaaagtaaactaattctatttatttttctttgaatcaagctcatgtactccttgtgctagaagttt |
418 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39852268 |
gaacttacttacatttttgaactaatatttaaaagaaagtaaactaattct-tttttttttctttgaatcaagctcatgtactccttgtgctagaagttt |
39852366 |
T |
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| Q |
419 |
ttcatgtactctcaatatagagtttttcatgtacttttatttactatctatgaatcaataattcaaaatgaattctata |
497 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
39852367 |
ttcatgtactctcaatatagattttctcatgtacttttatttactatctattaatcaataattcaaaattaattctata |
39852445 |
T |
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