View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_13 (Length: 486)
Name: NF11750_low_13
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 6292228 - 6292646
Alignment:
| Q |
17 |
ctttggactatgttttatttaatcctagtcaaggaatggttgatcctaccacaaatctacattatgataacatgctttatgctatggctgatgctgtatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6292228 |
ctttggactatgttttatttaatcctagtcaaggaatggttgatcctaccacaaatctacattatgataacatgctttatgctatggctgatgctgtatc |
6292327 |
T |
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| Q |
117 |
attttccatagctaaaatgggatttaaagggattgaagttagggtatccgagacaggttggccttctagaggcgacccgaatgaggttggtgcttctccg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6292328 |
attttccatagctaaaatgggatttaaagggattgaagttagggtatccgagacgggttggccttctagaggcgacccgaatgaggttggtgcttctccg |
6292427 |
T |
|
| Q |
217 |
caaaatgctgcaacttataatagaaacttgttgaagagacaaatggcgaatcaagggacacctttgaatcctagaatgaggttggaagtttacttgtttg |
316 |
Q |
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| T |
6292428 |
caaaatgctgcaacttataatagaaacttgttgaagagacaaatggcgaatcaagggacacctttgaatcctagaatgaggttggaagtttacttgtttg |
6292527 |
T |
|
| Q |
317 |
cattgtttaatgaagatttgaaacctggaccaacctcagaaagaaattatggtctttttagacctgatgaatctatgacttataatgtgggaatttctac |
416 |
Q |
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| T |
6292528 |
cattgtttaatgaagatttgaaacctggaccaacctcagaaagaaattatggtctttttagacctgatgaatctatgacttataatgtgggaatttctac |
6292627 |
T |
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| Q |
417 |
tcttgcaaccacttctcca |
435 |
Q |
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| T |
6292628 |
tcttgcaaccacttctcca |
6292646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 36381823 - 36381911
Alignment:
| Q |
166 |
gagacaggttggccttctagaggcgacccgaatgaggttggtgcttctccgcaaaatgctgcaacttataatagaaacttgttgaagag |
254 |
Q |
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| T |
36381823 |
gagacaggttggccttctaaaggtgatccggatgaggttggagcttcactacagaatgcagaaatttatcatagtaatttgttgaagag |
36381911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 32856598 - 32856211
Alignment:
| Q |
17 |
ctttggactatgttttatttaatcctagtcaaggaatggttgatcctaccacaaatctacattatgataacatgctttatgctatggctgatgctgtatc |
116 |
Q |
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|||| |||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| | |
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| T |
32856598 |
ctttagactatgtattatttaatcctaaccaaggaatggttgatcctaatacaaatttacattatgataacatgctttatgctatggtagatgctgttac |
32856499 |
T |
|
| Q |
117 |
attttccatagctaaaatgggatttaaagggattgaagttagggtatccgagacaggttggccttctagaggcgacccgaatgaggttggtgcttctccg |
216 |
Q |
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| T |
32856498 |
atttgcaattgctaaattaggttttaatgggatagaagttagggtttctgagactggttggccaagtaaaggtgactctgatgaaattggtgcatcattg |
32856399 |
T |
|
| Q |
217 |
caaaatgctgcaacttataatagaaacttgttgaagagacaaatggcgaatcaagggacacctttgaatcctagaatgaggttggaagtttacttgtttg |
316 |
Q |
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||||||||| || |||||| | || || |||| |||||||||| |||| |||||||||||||||||||||||||||| |||||| || ||||||| |
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| T |
32856398 |
aaaaatgctgaaatttataacaagaatttattgaggagacaaatgaagaatgaagggacacctttgaatcctagaatgagattggaatcatatttgtttg |
32856299 |
T |
|
| Q |
317 |
cattgtttaatgaagatttgaaacctggaccaacctcagaaagaaattatggtctttttagacctgatgaatctatgacttataatgt |
404 |
Q |
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|||| ||||||||| || |||| ||||||||||||||| || || |||||| | ||| ||||||||| ||||||||| ||||| |
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| T |
32856298 |
cattatttaatgaaaatatgaagaatggaccaacctcagagaggaactatggtttatttgagcctgatgaaagtatgacttacaatgt |
32856211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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