View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_14 (Length: 460)
Name: NF11750_low_14
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 8e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 1845405 - 1845591
Alignment:
| Q |
20 |
tctctattatgggacacaataaaattatcaaaattttaggccctatgtctcttggaattcctttatgttattggcatttatttgatttgcattagttttt |
119 |
Q |
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| T |
1845405 |
tctctattatgggacacaataaaattatcaaaattttaggccctatatctcttggaattcctttatgttattggcatttatttgatttgcattagttttt |
1845504 |
T |
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| Q |
120 |
ggttatattctgtccggaaaagctagtttaccttttatgtataaatgtatacaatcttgattgtttctattctaagacaaatttgtt |
206 |
Q |
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| T |
1845505 |
ggttatattctgtccggaaaagctagtttaccttttatgtataaatgtatacaatcttgattgtttctattctaagacaaatttgtt |
1845591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 238 - 445
Target Start/End: Original strand, 1845608 - 1845822
Alignment:
| Q |
238 |
ataagatagaaactaaatatatatttgcttgtgaatc-------tcgtacttgaaattgtaaggatctctaaaaattaaagattgtcaatcaaatggttt |
330 |
Q |
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| T |
1845608 |
ataagatagaaactaaatatatattttcttgtgaatcaccaatctcgtacttgaaattgtaaggatctctaaaaattaaagattgtcaatcaaatggttt |
1845707 |
T |
|
| Q |
331 |
ttccattgcaagtatgaggtagcaagttgactgcatatgtgacgcttacatggaacgtcttttagattcagccaaaaaattactttaggcgtgtcttatc |
430 |
Q |
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| T |
1845708 |
ttccattgcaagtatgaggtagcaagttgactgcatatgtgacgcttacatggaacgtcttttagattctgtcaaaaaattactttaggcgtgtcttatc |
1845807 |
T |
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| Q |
431 |
ttcttcgactttatt |
445 |
Q |
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| T |
1845808 |
ttcttcgactttatt |
1845822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 1820009 - 1820194
Alignment:
| Q |
20 |
tctctattatgggacac--aataaaattatcaaaattttaggccctatgtctcttggaattcctttatgttattggcatttatttgatttgcattagttt |
117 |
Q |
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||||||||||||||||| ||||||||||| ||| ||| ||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1820009 |
tctctattatgggacacacaataaaattatgaaattttgaggccctatatctctagcaattcctttatgttattggtatttatttgatttgcattagttt |
1820108 |
T |
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| Q |
118 |
ttggttatattctgtccggaaaagctagtttaccttttatgtataaatgtatacaatcttgattgtttctattctaagacaaattt |
203 |
Q |
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| T |
1820109 |
ttggttatactccgtccggaaaagttcgtttatcttttatagataaatgcatatagtattgattgcttatattctaagacaaattt |
1820194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 1848436 - 1848544
Alignment:
| Q |
20 |
tctctattatgggacacaataaaattatcaaaattttaggccctatgtctcttggaattcc-tttatgttattggca-tttatttgatttgcattagttt |
117 |
Q |
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|||||||||||||||||||||||| ||| ||| ||| ||||||||| ||||| | |||||| ||||||||||||| | ||| |||||||||||| ||| |
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| T |
1848436 |
tctctattatgggacacaataaaactattaaattttgaggccctatatctctagcaattccttttatgttattggtattttgcttgatttgcattccttt |
1848535 |
T |
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| Q |
118 |
ttggttata |
126 |
Q |
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||||||||| |
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| T |
1848536 |
ttggttata |
1848544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 726058 - 726016
Alignment:
| Q |
157 |
tgtataaatgtatacaatcttgattgtttctattctaagacaa |
199 |
Q |
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| T |
726058 |
tgtataaatgtattcaatgttgattgtttgtattctaagacaa |
726016 |
T |
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