View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_15 (Length: 457)
Name: NF11750_low_15
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 41475361 - 41475568
Alignment:
| Q |
1 |
gctacataaagaatatggcttctaacatatgacttcgactttttaccttccttcttatgtacaagatatgagtgtgtgtgagagagaaattttagaggga |
100 |
Q |
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| T |
41475361 |
gctacataaagaatatggcttctaacatatgacttcgactttttaccttccttcttatgtacaagatgagagcgtgtgtgagagagaaattttagaggga |
41475460 |
T |
|
| Q |
101 |
tatgaaatacatgtagaggaatcaagcaatttaatggaggaattagaaaaaggaaaagaacatcctcgactaccagatgcaaatgcagaagtatggttca |
200 |
Q |
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| T |
41475461 |
tatgaaatacatgtagaggaatcaagcaatttaatggaggaattagaaaaaggaaacgaacatcctcgactaccagatgcaaatgcagaagtatggttca |
41475560 |
T |
|
| Q |
201 |
attcttcc |
208 |
Q |
| |
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|||||||| |
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| T |
41475561 |
attcttcc |
41475568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 41475677 - 41475800
Alignment:
| Q |
317 |
agaccaatggaccagtgattagatggagaaagaattaagaatacaaagtgttgtgatgttcttcactgactatcttttaatgcctttccatttctcaaaa |
416 |
Q |
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| T |
41475677 |
agaccaatggacgagtgattagatggagaaagaatgaagaatacaaagtgtcgtgatgttcttcactgactatcttttaatgccttcttatttctcaaaa |
41475776 |
T |
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| Q |
417 |
tgtttaagaatgagactcaaacat |
440 |
Q |
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| T |
41475777 |
tgtttaagaatgagactcaaacat |
41475800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 48119121 - 48119282
Alignment:
| Q |
4 |
acataaagaatatggcttctaacatatgacttcgactttttaccttccttcttatgtacaagatatgagtgtgtgtgagagagaaattttagagggatat |
103 |
Q |
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| T |
48119121 |
acataaagaatatggcttctaacatatgacttcgactttttaccttccttcttatgtataacat--gagcgtgtgtgagagagaaattttagagggatat |
48119218 |
T |
|
| Q |
104 |
gaaatacatgtagaggaatcaagcaatttaatggaggaattagaaaaaggaaaagaacatcctc |
167 |
Q |
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| T |
48119219 |
gaaatacatgtagaggaatcaagcaatttaatggaggaattagaaaaaggaaacaaacatcctc |
48119282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 48119395 - 48119518
Alignment:
| Q |
317 |
agaccaatggaccagtgattagatggagaaagaattaagaatacaaagtgttgtgatgttcttcactgactatcttttaatgcctttccatttctcaaaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
48119395 |
agaccaatggaccagtgattagatggagaaagaatgaagaatacaaagtgttgtgatgttctttactggctatcttttaatgccttcccatttctcaaaa |
48119494 |
T |
|
| Q |
417 |
tgtttaagaatgagactcaaacat |
440 |
Q |
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|||||||||||||||||||||||| |
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| T |
48119495 |
tgtttaagaatgagactcaaacat |
48119518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 440
Target Start/End: Complemental strand, 1137883 - 1137794
Alignment:
| Q |
351 |
ttaagaatacaaagtgttgtgatgttcttcactgactatcttttaatgcctttccatttctcaaaatgtttaagaatgagactcaaacat |
440 |
Q |
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|||||||||||||||||||||||||| ||| | |||||||||||||| || | ||||||||||| ||| || ||||||||||||||| |
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| T |
1137883 |
ttaagaatacaaagtgttgtgatgttattcgataactatcttttaatggctcccaatttctcaaaagttttgaggatgagactcaaacat |
1137794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 317 - 440
Target Start/End: Complemental strand, 10207085 - 10206962
Alignment:
| Q |
317 |
agaccaatggaccagtgattagatggagaaagaattaagaatacaaagtgttgtgatgttcttcactgactatcttttaatgcctttccatttctcaaaa |
416 |
Q |
| |
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|||||||||||| |||| |||||| |||||||| ||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
10207085 |
agaccaatggacttgtgaatagatgctgaaagaatgaagaatacaaaatgttgtgatgttcttcaccggctatcttttaatgtctttccatttctcaaaa |
10206986 |
T |
|
| Q |
417 |
tgtttaagaatgagactcaaacat |
440 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
10206985 |
tatttaagaatgagactcaaacat |
10206962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 10207340 - 10207189
Alignment:
| Q |
66 |
atatgagtgtgtgtgagagagaaattttagagggatatgaaatacatgtagaggaat--------caagcaatttaatggaggaattagaaaaaggaaaa |
157 |
Q |
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|||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||| || |||||||||| |||||||| ||||||| ||| |
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| T |
10207340 |
atatgagtgtgtatgacacagaaattttagagggtaatgaaatacatgtagaggaatggaggaatcacgcaatttaattgaggaatttgaaaaagaaaac |
10207241 |
T |
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| Q |
158 |
gaacatcctcgac-taccagatgcaaatgcagaagtatggttcaattcttcc |
208 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||| ||||||| |
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| T |
10207240 |
aaacatcctcgacttaccagatgctaatgcagaagtatggttcagttcttcc |
10207189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 10207412 - 10207370
Alignment:
| Q |
21 |
tctaacatatgacttcgactttttaccttccttcttatgtaca |
63 |
Q |
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| T |
10207412 |
tctaacataagacttcgaccttttaccttccctcttatgtaca |
10207370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 51033713 - 51033602
Alignment:
| Q |
74 |
gtgtgtgagagagaaattttagagggatatgaaatacatgtag--------aggaatcaagcaatttaatggaggaattagaaaaaggaaaagaacatcc |
165 |
Q |
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| T |
51033713 |
gtgtgtgagatagaaattgtagagggagaggaaatacatgtagaggcacgaaggaataaagcaatttaagggagg--gtaaaaaaaggaaacaaacatcc |
51033616 |
T |
|
| Q |
166 |
tcgactaccagatg |
179 |
Q |
| |
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|||||||||||||| |
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|
| T |
51033615 |
tcgactaccagatg |
51033602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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