View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_16 (Length: 454)
Name: NF11750_low_16
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 440
Target Start/End: Original strand, 46112500 - 46112931
Alignment:
| Q |
10 |
gcacagataccaccaggtcggcccagtgttattttacaaaattgattacaaaatggtgaaccaccaaaaccagcacatctttcgtacaaaatgcactttg |
109 |
Q |
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| T |
46112500 |
gcacagataccaccagatctgcccagtgttattttacaaaattgattacaaaatggtgaaccaccaccaccagcacatcattcatacaaaaagcactttg |
46112599 |
T |
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| Q |
110 |
gttcatcatctattgaatcaactattcctgttacaataatgaaattccgttaaaaatattatctaatattttcagaaattttattgcattttcaaagata |
209 |
Q |
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| T |
46112600 |
gttcatcatctattgaatcaactattcctgttacaataatgaaattccgttaaaaatattatctaatattttcagaaattttattgcattttcaaagata |
46112699 |
T |
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| Q |
210 |
tagcaaacactttcatgaaaacgtgattcctaaaacctgcattaaaaaagtatgcatatcaaacaccactcatttttatttatacgaaaaatttagagca |
309 |
Q |
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| T |
46112700 |
tagcaaacactttcatgaaaacgtgattcctaaaacctgcattaaaaaagtatgcatatcaaacaccactcatttttatttatacgaaaaatttagagca |
46112799 |
T |
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| Q |
310 |
agtggactatgcctcaatcttatataggaaagaccttaaaa-ttttgacaacattgaccaagagatatacatttatcttaatacaaaaacattagcaaga |
408 |
Q |
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| T |
46112800 |
agtggactatacctcaatcttatataggaaagaccttaaaatttttgacaacattgaccaagagatatacatttatcttaatacaaaaacattagcaaga |
46112899 |
T |
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| Q |
409 |
ccacaatacatgatccaatgcctctttctttt |
440 |
Q |
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| T |
46112900 |
ccacaatatatgatccaatgcctctttctttt |
46112931 |
T |
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Back To:
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 17449052 - 17449129
Alignment:
| Q |
95 |
acaaaatgcactttggttcatcatctattgaatcaactattcctgttacaataatgaaattccgttaaaaatattatctaa |
175 |
Q |
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| T |
17449052 |
acaaaaagcactttcgtgtagcatctgttggatcgactattcctgttacaat---gaaactccgttaaaaatattatctaa |
17449129 |
T |
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