View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11750_low_17 (Length: 450)
Name: NF11750_low_17
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 241 - 408
Target Start/End: Original strand, 14948838 - 14948998
Alignment:
| Q |
241 |
tccacttaggtcccctccaagtaaacttagtccctgttgtagtaacctccatcaaactacggtcatgtcattgattcgattgttaaaattctgacatttt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
14948838 |
tccacttaggtcccctccaagtaaacttagtcc-tgctgtagtaacttccatcaacctacggtgat-----tgattcgattgttaaaattctgacatttt |
14948931 |
T |
|
| Q |
341 |
ctaatgtccacctgcactcctccttttttctcatttggatttgaaatctcattgaaatcacccatcat |
408 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
14948932 |
ctaatgtccacctgcactcctcc-tttttctcatttggatttgcaatcttattgaaatcacccatcat |
14948998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 14948184 - 14948289
Alignment:
| Q |
17 |
gttcattgttgcgatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaattaaacatcaaactctcaaatatacaaaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14948184 |
gttcattgttgcgatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaattaaatatcaaactctcaaatatacaaaat |
14948283 |
T |
|
| Q |
117 |
caatct |
122 |
Q |
| |
|
|||||| |
|
|
| T |
14948284 |
caatct |
14948289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 14948701 - 14948793
Alignment:
| Q |
130 |
ctcagtatgaacaataatagggtggtgatcagactgcacatgcggaaagactttagctatcccatcgtgaaatctcaatctccaactgacatt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14948701 |
ctcagtatgaacaataatagggtggtgatcatactgcacacccgaaaagactttagctatcccatcatgaaatctcaatctccaactgacatt |
14948793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 439
Target Start/End: Original strand, 14949029 - 14949061
Alignment:
| Q |
407 |
atggtgaagcttttgccatgtttcgttcctctc |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14949029 |
atggtgaagcttttgccatgtttcgttcctctc |
14949061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 31046212 - 31046270
Alignment:
| Q |
29 |
gatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaat |
87 |
Q |
| |
|
||||||||||||| ||| ||||||| | |||||||||||||||| ||||| |||||||| |
|
|
| T |
31046212 |
gatgaactccaatgatttcaagacattattttataaattgcatattttcaaaaccaaat |
31046270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 29544550 - 29544478
Alignment:
| Q |
22 |
ttgttgcgatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaattaaacat |
94 |
Q |
| |
|
|||||| ||||||||| || |||| ||| |||| |||||||||||||||| ||||| ||| |||| |||||| |
|
|
| T |
29544550 |
ttgttgtgatgaactctgatgattctaagtcaatattttataaattgcatattttcaaaacaaaatcaaacat |
29544478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University