View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_19 (Length: 438)
Name: NF11750_low_19
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 16963002 - 16963423
Alignment:
| Q |
1 |
tgaaatgaaaaatatgatctaaatttaacttgtgcactag--tatgaaatgtttatatgtatgtaattatggccttacttgcataaatatttagtcttga |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16963002 |
tgaaatgaaaaatatgatctaaatttaacttgtgcactacaatatgaaatgtttatgtgtatgtaattatggccttacttgcataaatatttagtcttga |
16963101 |
T |
|
| Q |
99 |
ttctcttgaaatatcaacagatctatcttctctttctgctttagactttctcaaaatgaacagaaagagtagaatcaaaagccctacaattacaacaaaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16963102 |
ttctcttgaaatatcaacagatctatcttctctttctgctttggactttctcaaaatgaacagaaagagtagaatcaaaagccctacaattccaacaaaa |
16963201 |
T |
|
| Q |
199 |
cctccaataataccaaataatactcctagctgcatcattgattttttcggcttctcaaatctcggcttagcggctaacaccgttgaattcttgcactgtg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16963202 |
cctccaataataccaaataatactcctagctgcatcattgattttttcggcttctcaaatctcggcttagcggctaacaccgttgaattcttgcaatgtg |
16963301 |
T |
|
| Q |
299 |
aagatgaatgttgatcactgacatttcttgctgataaacaattaccagaataaactattgttcgattaaccgacaacgtcgaatcgatgcatgatggcaa |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||| |
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| T |
16963302 |
aagatgaatgttgatcactgacatttcttgctgataaacaattaccagaataaactattgttcgattcaacgacaatgtcgaatcaatgcatgatggcaa |
16963401 |
T |
|
| Q |
399 |
ttttccttccagagaattgttt |
420 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
16963402 |
ttttccttctagagaattgttt |
16963423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 63 - 420
Target Start/End: Original strand, 16215792 - 16216168
Alignment:
| Q |
63 |
aattatggccttacttgcataaatatttagtcttgattctcttgaaatatcaacagatctat---------------cttctctttctgctttagacttt |
147 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16215792 |
aattgtggccttacttgcataaatatttggtcttgattctcttgaaatatcaacagatctatgatctattttactatcttctctttctgctttagacttt |
16215891 |
T |
|
| Q |
148 |
ctcaaaatgaacagaaagagtagaatcaaaagccctacaattacaacaaaacctccaataataccaaataatactcctagctgcatcattgattttttcg |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16215892 |
ctcaaaatgaacagaaagagtagaatcaaaagccctacaattacaacaaaacctccaataataccaaataatactcctagttgcatcattgattttttcg |
16215991 |
T |
|
| Q |
248 |
gcttctcaaatctcggcttagcggctaacaccgttgaattcttgcactgtgaagatgaatgttgatcactgacatttcttgctgataaacaattaccaga |
347 |
Q |
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|||| |||||||||| || |||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
16215992 |
gcttatcaaatctcgtctcagcggctaacactgttgaattcttgcaatgtgaagatgaatgttgatcactgatatttcttgctgacaaacaattaccaga |
16216091 |
T |
|
| Q |
348 |
ataaactattgttcgattaaccgacaacgtcgaatc----gatgcatgatggcaattttccttccagagaattgttt |
420 |
Q |
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| T |
16216092 |
ataaactattgttcgattaaccgacaacgtcgaatcaattaatgcatgatggcaattttccttctagagaattgttt |
16216168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 142 - 365
Target Start/End: Original strand, 48892031 - 48892257
Alignment:
| Q |
142 |
gactttctcaaaatgaacagaaagagtagaatcaaaagccctacaattacaacaaaacctccaataataccaaataatactcctagctgcatcattgatt |
241 |
Q |
| |
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||||||||||||||||||||||| | || ||||||||||||| ||||| | ||||||||||||||| || ||| || || |||||| ||| | |||||| |
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| T |
48892031 |
gactttctcaaaatgaacagaaaaaatataatcaaaagccctgcaattcctacaaaacctccaatagtatcaagtattagtcctagttgctcctttgatt |
48892130 |
T |
|
| Q |
242 |
ttttcggcttctcaaatctcggcttagcggctaacaccgttgaattcttgcactgtgaagatgaatgttgatcactgacatttcttgctgata---aaca |
338 |
Q |
| |
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| | |||||||||||| |||| || ||| |||| | |||||||| | |||||||| |||||||||||||| | |||| | ||| | |||| |
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| T |
48892131 |
cctacttaccctcaaatctcggattagtggataaggccgtcaatttcttgcaatatgaagatggatgttgatcactgaaacttctagttgacaaacaaca |
48892230 |
T |
|
| Q |
339 |
attaccagaataaactattgttcgatt |
365 |
Q |
| |
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||| ||||||||||||||| ||||||| |
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| T |
48892231 |
attgccagaataaactatttttcgatt |
48892257 |
T |
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Back To:
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