View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_20 (Length: 420)
Name: NF11750_low_20
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 410
Target Start/End: Original strand, 42464593 - 42464993
Alignment:
| Q |
10 |
gatgaagaggggcgtataattgaattttcagaaaagccaaaaggagaccagttgcaagctatgaaggtgagtccataattcttacctaaacaaatgcttc |
109 |
Q |
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| T |
42464593 |
gatgaagaggggcgtataattgaattttcagaaaagccaaaaggagaccagttgcaagctatgaaggtgagtccataattcttacctaaacaaatgcttc |
42464692 |
T |
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| Q |
110 |
agaagttacaataatatttattctctattattaggtcgatactaccattttgggtcttgatgatgaaagagcaaaggaaatgccttttattgctagcatg |
209 |
Q |
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| T |
42464693 |
agaagttacaataatatttattctctattattaggtcgatactaccattttgggtcttgatgatgaaagagcaaaggaaatgccttttattgctagcatg |
42464792 |
T |
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| Q |
210 |
ggtatatatgttatcagcaaaaatgtgatgttagacttgcttcgcgaccaatttcctggtgcaaatgactttgggagtgaagtgattcctggtgctactt |
309 |
Q |
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| T |
42464793 |
ggtatatatgttatcagcaaaaatgtgatgttagacctgcttcgcgaccaatttcctggtgcaaatgactttgggagtgaagtgattcctggtgctactt |
42464892 |
T |
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| Q |
310 |
ccatcggaaagagagtatgtgttctttctagttgttcaatttcaagaaactttgacttttttctaaaacctcattacgataaaggtcgatgcttatattt |
409 |
Q |
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| T |
42464893 |
ccattggaaagagagtatgtgttctttctagttgttcaatttcaagaaactttgacttttttctaaaacctcattacgataaaggtcaatgcttatattt |
42464992 |
T |
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| Q |
410 |
g |
410 |
Q |
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| T |
42464993 |
g |
42464993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 138 - 304
Target Start/End: Original strand, 37078525 - 37078691
Alignment:
| Q |
138 |
tattaggtcgatactaccattttgggtcttgatgatgaaagagcaaaggaaatgccttttattgctagcatgggtatatatgttatcagcaaaaatgtga |
237 |
Q |
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|||||||| |||||||| ||||||||||| ||||| || ||||||||||||||||||| ||||||||| ||||||||||||||| | |||||| |||||| |
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| T |
37078525 |
tattaggttgatactactattttgggtctcgatgacgagagagcaaaggaaatgccttatattgctagtatgggtatatatgttgtaagcaaacatgtga |
37078624 |
T |
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| Q |
238 |
tgttagacttgcttcgcgaccaatttcctggtgcaaatgactttgggagtgaagtgattcctggtgc |
304 |
Q |
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| T |
37078625 |
tgctagatctgctccgcgacaagtttcctggtgcaaacgactttgggagtgaagttattcctggtgc |
37078691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 37078373 - 37078449
Alignment:
| Q |
10 |
gatgaagaggggcgtataattgaattttcagaaaagccaaaaggagaccagttgcaagctatgaaggtgagtccata |
86 |
Q |
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||||||||||||||||||||||||||| | || |||||||||||||| |||||| |||||||||| ||||| ||||| |
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| T |
37078373 |
gatgaagaggggcgtataattgaatttgccgagaagccaaaaggagaacagttgaaagctatgaaagtgaggccata |
37078449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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