View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_22 (Length: 403)
Name: NF11750_low_22
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Complemental strand, 2914846 - 2914472
Alignment:
| Q |
13 |
agatgttgcggtataatggtattattaatcattcaaaatggctttcttcactaacaaatattgttgaaatctctctcactttttgtggaagtttgcagtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914846 |
agatgttgcggtataatggtattattaatcattcaaaatggctttcttcactaacaaatattgttgaaatctctctcactttttgtggaagtttgcagtt |
2914747 |
T |
|
| Q |
113 |
tctccccccattggaacatcttccattccctaagtcacttcatataggttaccttggtatgctggaatgtatacattacgaaaagcctctttttcctgaa |
212 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914746 |
tctccccccattggaacatcttccattccttaagtcacttcatataggttaccttggtatgctggaatgtatacattacgaaaagcctctttttcctgaa |
2914647 |
T |
|
| Q |
213 |
aaattcttcccatctttggagagcctcaagttggagtattgcttagagttgaggggatggtataggataggagacgatattaactctacacaatcacgcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914646 |
aaattcttcccatctttggagagcctcaagttggagtattgcttagagttgaggggatggtataggataggagacgatattaactctacacaatcacgcc |
2914547 |
T |
|
| Q |
313 |
atttatccttacctccttttcctcttctttctcaattatcaatcgaaggatgtcggaagttgacttgcatgcctg |
387 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914546 |
atttatccttacctccttttcctcttctttctcaattatcaatcgaaggatgtcggaagttgacttgcatgcctg |
2914472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 43 - 385
Target Start/End: Complemental strand, 2909858 - 2909516
Alignment:
| Q |
43 |
attcaaaatggctttcttcactaacaaatattgttgaaatctctctcactttttgtggaagtttgcagtttctccccccattggaacatcttccattccc |
142 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||| ||||| |||||||||| || ||||| | ||| ||||||| |
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| T |
2909858 |
attcaaactggctttcttcactgacaaatattgttgaaatttctctcacttgctgtgagggtttggagtttctccctcctttggagcgtctcccattcct |
2909759 |
T |
|
| Q |
143 |
taagtcacttcatataggttaccttggtatgctggaatgtatacattacgaaaagcctctttttcctgaaaaattcttcccatctttggagagcctcaag |
242 |
Q |
| |
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||| || ||| ||||| ||| ||| || ||||| ||| |||||||| ||| ||||| |||| |||||| || |||||||||||||| ||||||| | |
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| T |
2909758 |
taaatctctttatataagttttcttcgtgtgctgaaatacatacattatgaagagcctattttgtctgaaatttttttcccatctttggaaagcctcagg |
2909659 |
T |
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| Q |
243 |
ttggagtattgcttagagttgaggggatggtataggataggagacgatattaactctacacaatcacgccatttatccttacctccttttcctcttcttt |
342 |
Q |
| |
|
|||||| |||||| | | |||| |||||||| ||||| |||||| | |||| ||||| ||||||||| ||| |||||| || || ||||||||||| | |
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| T |
2909658 |
ttggaggattgctcatacttgatgggatggtgtaggacaggagatggtattgactcttcacaatcacatcatagatcctttccaccctttcctcttctat |
2909559 |
T |
|
| Q |
343 |
ctcaattatcaatcgaaggatgtcggaagttgacttgcatgcc |
385 |
Q |
| |
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|||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
2909558 |
ctcagttatcaatcgaaggatgtcagaggttgacttgcatgcc |
2909516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 3281101 - 3280977
Alignment:
| Q |
44 |
ttcaaaatggctttcttcactaacaaatattgttgaaatctctctcactttttgtggaagtttgcagtttctccccccattggaacatcttccattccct |
143 |
Q |
| |
|
|||||| ||| |||||||| | |||||||||||||||||||| ||| ||| ||||||||| | |||| |||||| |||||||| ||||| ||||||| | |
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| T |
3281101 |
ttcaaactggatttcttcattgacaaatattgttgaaatctccctctttttgtgtggaagtctccagtatctcccaccattggagcatctcccattcctt |
3281002 |
T |
|
| Q |
144 |
aagtcacttcatataggttaccttg |
168 |
Q |
| |
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||||||||||||||| ||| ||||| |
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| T |
3281001 |
aagtcacttcatataagtttccttg |
3280977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 13792793 - 13792917
Alignment:
| Q |
44 |
ttcaaaatggctttcttcactaacaaatattgttgaaatctctctcactttttgtggaagtttgcagtttctccccccattggaacatcttccattccct |
143 |
Q |
| |
|
|||||| ||||| || |||| |||||||||||| |||| ||| || ||| || |||||| |||||| |||||| || ||||| | ||| ||||||| | |
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|
| T |
13792793 |
ttcaaactggctctcaccactcacaaatattgttaaaatatctttctttttgtgcggaagtctgcagtatctcccaccgttggagcgtctcccattcctt |
13792892 |
T |
|
| Q |
144 |
aagtcacttcatataggttaccttg |
168 |
Q |
| |
|
||||||||||||||| ||| ||||| |
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| T |
13792893 |
aagtcacttcatataagtttccttg |
13792917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 9849705 - 9849518
Alignment:
| Q |
48 |
aaatggctttcttcactaacaaatattgttgaaatctctctcactttttgtggaagtttgcagtttctccccccattggaacatcttccattccctaagt |
147 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||| ||||| || |||| || |||| || | |||||| ||| |||||| ||||||||||| ||||| |
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|
| T |
9849705 |
aaatggctttctccactcacaaatataattgaaatatctcttgattgttgtcgaggtttacaatatctcccaccactggaacgtcttccattccttaagt |
9849606 |
T |
|
| Q |
148 |
cacttcatataggttaccttggtatgctggaatgtatacattacgaaaagcctctttttcctgaaaaattcttcccatctttggagag |
235 |
Q |
| |
|
||||| | || ||||||| | | |||| | ||| |||||||| ||||| || ||| |||| ||||||||||||||||||||| |
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| T |
9849605 |
cacttgagttatgttacctcgatgaattggagtacatatattacgaagagcctattcttcatgaatcattcttcccatctttggagag |
9849518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 3280827 - 3280767
Alignment:
| Q |
318 |
tccttacctccttttcctcttctttctcaattatcaatcgaaggatgtcggaagttgactt |
378 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| ||||||| || |||||||| |
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|
| T |
3280827 |
tccttgcctccttttcctcgtctttctcaattatcaatcataggatgtttgatgttgactt |
3280767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 3172430 - 3172385
Alignment:
| Q |
44 |
ttcaaaatggctttcttcactaacaaatattgttgaaatctctctc |
89 |
Q |
| |
|
|||||| ||| |||||||||| ||| |||||||||||||||||||| |
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|
| T |
3172430 |
ttcaaattggttttcttcactcacatatattgttgaaatctctctc |
3172385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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