View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_23 (Length: 360)
Name: NF11750_low_23
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 1832862 - 1832729
Alignment:
| Q |
18 |
agtgtaaaagtggattttggagatgaaagagaattgaaaagagaagagtaaaagggtttctgagatgaactttgtgatgttattcttgttcaatatttga |
117 |
Q |
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| T |
1832862 |
agtgtaaaagtggattttggagatgaaagagaattgaaaagagaagagtaaaagggtttctgagatgaactttgtgatgttattcttgttcaatatttga |
1832763 |
T |
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| Q |
118 |
aatttgaggttgttgttgttggagtgtatagttt |
151 |
Q |
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| T |
1832762 |
aatttgaggttgttgttgttggagtgtatagttt |
1832729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 1867305 - 1867172
Alignment:
| Q |
18 |
agtgtaaaagtggattttggagatgaaagagaattgaaaagagaagagtaaaagggtttctgagatgaactttgtgatgttattcttgttcaatatttga |
117 |
Q |
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| T |
1867305 |
agtgtaaaagtggattttggagatgaaagagaattgaaaagagaagagtaaaagggtttctgagatgaactttgtgatgttattcttgttcaatatttga |
1867206 |
T |
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| Q |
118 |
aatttgaggttgttgttgttggagtgtatagttt |
151 |
Q |
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| T |
1867205 |
aatttgaggttgttgttgttggagtgtatagttt |
1867172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 1832633 - 1832554
Alignment:
| Q |
264 |
tatggattactgccggaaaacttaagtgaaatgaaaaggggtaaaattgtattttccaatgataaaattgctactctgtg |
343 |
Q |
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| T |
1832633 |
tatggattactgccggaaaacttaagtgaaatgaaaaggggtaaaattgtattttccaatgataaaattgctactgtgtg |
1832554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 1867076 - 1866997
Alignment:
| Q |
264 |
tatggattactgccggaaaacttaagtgaaatgaaaaggggtaaaattgtattttccaatgataaaattgctactctgtg |
343 |
Q |
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| T |
1867076 |
tatggattactgccggaaaacttaagtgaaatgaaaaggggtaaaattgtattttccaatgataaaattgctactgtgtg |
1866997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 1832710 - 1832679
Alignment:
| Q |
170 |
taaacagagattgaaaattggttgcatttggg |
201 |
Q |
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| T |
1832710 |
taaacagagattgaaaattggttgcatttggg |
1832679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 1867153 - 1867122
Alignment:
| Q |
170 |
taaacagagattgaaaattggttgcatttggg |
201 |
Q |
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| T |
1867153 |
taaacagagattgaaaattggttgcatttggg |
1867122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 8518215 - 8518173
Alignment:
| Q |
32 |
ttttggagatgaaagagaattgaaaagagaagagtaaaagggt |
74 |
Q |
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| T |
8518215 |
ttttggagatggaagagaattgaagagagaagggtaaaagggt |
8518173 |
T |
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