View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_26 (Length: 335)
Name: NF11750_low_26
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_26 |
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| [»] chr8 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 42312011 - 42312336
Alignment:
| Q |
10 |
gcagagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgagg |
109 |
Q |
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||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42312011 |
gcagagatagtcgaagaacacgacgtcataaccactattaagaagatgagggtgtacaaagtaactgtagggatgaaagagaggcaaatgtgaaatgagg |
42312110 |
T |
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| Q |
110 |
ttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42312111 |
ttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaat |
42312210 |
T |
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| Q |
210 |
tgatgtatcaaatgagatgatccaattgtattacttgcaatagcaacagtgaaacacaataacaaacatgtataatttcactcatagtatttcatccaca |
309 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
42312211 |
tgatgtatcaaatgagatgatccacttgtattacttgcaatagcaacagtgaaacacaataacaaacatgtataatttcgctcatagtatttcatctaca |
42312310 |
T |
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| Q |
310 |
tcatagaaagtcaccttttatatttt |
335 |
Q |
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||| |||||||||||||||||||||| |
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| T |
42312311 |
tcagagaaagtcaccttttatatttt |
42312336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 8333983 - 8333926
Alignment:
| Q |
209 |
ttgatgtatcaaatgagatgatccaattgtattacttgcaatagcaacagtgaaacac |
266 |
Q |
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| T |
8333983 |
ttgatgtatcgaatgagatgatccagccgtattacttgcaatagcaacagtgagacac |
8333926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 12049588 - 12049540
Alignment:
| Q |
209 |
ttgatgtatcaaatgagatgatccaattgtattacttgcaatagcaaca |
257 |
Q |
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| T |
12049588 |
ttgatgtatcaaatgagatgatccagctgtgttacttgccatagcaaca |
12049540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 47247400 - 47247077
Alignment:
| Q |
12 |
agagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggtt |
111 |
Q |
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| T |
47247400 |
agagatagtcggagaacacgacgtcatagccgctgttaaaaagatgagggtgtacgaagtaactgtcgggatgaaagagagacaaatgtgaaatgaggtt |
47247301 |
T |
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| Q |
112 |
caatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaattg |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47247300 |
caatgttttatgagtgagcataaaatgcagggttgaaagacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaatta |
47247201 |
T |
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| Q |
212 |
atgtatcaaatgagatgatccaattgtattacttgcaatagcaacagtgaaacacaataacaaacatgtataatttcactcatagtatttcatccacatc |
311 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |
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| T |
47247200 |
atgtatcaaatgagatgatccacttgtattacttgcaatagcaacagtgaaacacaataacaaacatgtataatttcgcttatagtatttcatctacatc |
47247101 |
T |
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| Q |
312 |
atagaaagtcaccttttatatttt |
335 |
Q |
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|||||||||||||||||||||||| |
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| T |
47247100 |
atagaaagtcaccttttatatttt |
47247077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 41325893 - 41326051
Alignment:
| Q |
10 |
gcagagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgagg |
109 |
Q |
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|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41325893 |
gcagagatggtcggagaacacgacgtcatagccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgagg |
41325992 |
T |
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| Q |
110 |
ttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatg |
169 |
Q |
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| T |
41325993 |
ttcaatgttttat-agtgagcataaaatgtaggtctgaaagacaaatatataaaacaatg |
41326051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 41326063 - 41326120
Alignment:
| Q |
278 |
tgtataatttcactcatagtatttcatccacatcatagaaagtcaccttttatatttt |
335 |
Q |
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||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
41326063 |
tgtataatttcgctcatagtttttcatctacatcatagaaagtcaccttttatttttt |
41326120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 20908960 - 20909202
Alignment:
| Q |
10 |
gcagagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgagg |
109 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20908960 |
gcagagatagtcggagaacacgacgtcatagtcgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgagg |
20909059 |
T |
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| Q |
110 |
ttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaat |
209 |
Q |
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|||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20909060 |
ttcaatgttttaggagtgagcataaaatttagggttgaaagacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaat |
20909159 |
T |
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| Q |
210 |
tgatgtatcaaatgagatgatccaattgtattacttgcaatag |
252 |
Q |
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| T |
20909160 |
tgatgtatcaaatgagatgatccacttgtattacttgcaatag |
20909202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 20923408 - 20923650
Alignment:
| Q |
10 |
gcagagatagtcggggaacacgacgtcataaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgagg |
109 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20923408 |
gcagagatagtcggagaacacgacgtcatagtcgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgagg |
20923507 |
T |
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| Q |
110 |
ttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaat |
209 |
Q |
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|||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20923508 |
ttcaatgttttaggagtgagcataaaatttagggttgaaagacaaatatataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaat |
20923607 |
T |
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| Q |
210 |
tgatgtatcaaatgagatgatccaattgtattacttgcaatag |
252 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20923608 |
tgatgtatcaaatgagatgatccacttgtattacttgcaatag |
20923650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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