View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_29 (Length: 300)
Name: NF11750_low_29
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_29 |
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| [»] scaffold0511 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 42465069 - 42465352
Alignment:
| Q |
1 |
tttgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatctcggaatcacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42465069 |
tttgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatctcggaatcacca |
42465168 |
T |
|
| Q |
101 |
aaaagcctgtacctgacttcaggtaaataaataggctatatgccatataatcatcatattgtcatgtcaatgtactcgatgagagcatcttggtcatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42465169 |
aaaagcctgtacctgacttcaggtaaataaataggctatatgccatataatcatcatattgtcatgtcaatgtactcgatgagagcatcttggtcatgat |
42465268 |
T |
|
| Q |
201 |
gtttatggatattaatttcagtttctatgatcgttcatctccaatttacacccaaccgcgatatttgcctccatcaaagatgct |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42465269 |
gtttatggatattaatttcagtttctatgatcgttcatctccaatttacacccaaccgcgatatttgcctccatcaaagatgct |
42465352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 1065 - 1346
Alignment:
| Q |
3 |
tgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatctcggaatcaccaaa |
102 |
Q |
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||||||||||| | ||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |
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| T |
1065 |
tgtgaaaaatttataggtgtaagcttacttatatgatggctactaggaagacattggtatcgttgaggctttcaataatgcaaatctcggaatcaccaaa |
1164 |
T |
|
| Q |
103 |
aagcctgtacctgacttcaggtaaataaataggctatatgccatataatcatcatattgtcatgtcaatgtactcgatgagagcatcttggtcatgatgt |
202 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |
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| T |
1165 |
aagcctgtacatgacttcaggtaaataaataggctatataccatataatcatcatattgtcatgtcaatgcactttatgagagcatcttggtcatggtgt |
1264 |
T |
|
| Q |
203 |
ttatggatattaatttcagtttctatgatcgttcatctccaatttacacccaaccgcgatatttgcctccatcaaagatgct |
284 |
Q |
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|||||||||||||||| ||| || ||||||||||||||| ||||||| |||||| ||||||||||||| || |||||||| |
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| T |
1265 |
caatggatattaatttcaatttgtacgatcgttcatctccagtttacactcaaccgtgatatttgcctccgtcgaagatgct |
1346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 18317081 - 18317362
Alignment:
| Q |
3 |
tgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatctcggaatcaccaaa |
102 |
Q |
| |
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||||||||||| | ||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |
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| T |
18317081 |
tgtgaaaaatttataggtgtaagcttacttatatgatggctactaggaagacattggtatcgttgaggctttcaataatgcaaatctcggaatcaccaaa |
18317180 |
T |
|
| Q |
103 |
aagcctgtacctgacttcaggtaaataaataggctatatgccatataatcatcatattgtcatgtcaatgtactcgatgagagcatcttggtcatgatgt |
202 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |
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| T |
18317181 |
aagcctgtacatgacttcaggtaaataaataggctatataccatataatcatcatattgtcatgtcaatgcactttatgagagcatcttggtcatggtgt |
18317280 |
T |
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| Q |
203 |
ttatggatattaatttcagtttctatgatcgttcatctccaatttacacccaaccgcgatatttgcctccatcaaagatgct |
284 |
Q |
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|||||||||||||||| ||| || ||||||||||||||| ||||||| |||||| ||||||||||||| || |||||||| |
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| T |
18317281 |
caatggatattaatttcaatttgtacgatcgttcatctccagtttacactcaaccgtgatatttgcctccgtcgaagatgct |
18317362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 42301101 - 42300818
Alignment:
| Q |
1 |
tttgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatctcggaatcacca |
100 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||| |||||||| ||| |
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| T |
42301101 |
tttgtgaaaaattcataggtataagcttacttatatgatggctaccgggaagacattgataccattgaggcattctataatgtgaatttcggaatcgcca |
42301002 |
T |
|
| Q |
101 |
aaaagcctgtacctgacttcaggtaaataaataggctatatgccatataatcatcatattgtcatgtcaatgtactcgatgagagcatcttggtcatgat |
200 |
Q |
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|||||| ||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | |
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| T |
42301001 |
aaaagcatgtacttgacttcaggtaaataaataggctatcttccatataatcatcatattgtcatgtcaatgcactctatgagagcatcttggtcatggt |
42300902 |
T |
|
| Q |
201 |
gtttatggatattaatttcagtttctatgatcgttcatctccaatttacacccaaccgcgatatttgcctccatcaaagatgct |
284 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||| || ||||||| ||| ||| |||||||||||| || |||||||| |
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| T |
42300901 |
gtcaatggatcttaatttcagtttctatgatcgttcatcttcagtttacactcaatcgcaatatttgcctccgtcgaagatgct |
42300818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 56536779 - 56537002
Alignment:
| Q |
61 |
accattgaggctttctataatgcaaatctcggaatcaccaaaaagcctgtacctgacttcaggtaaataaataggctatatgccatataatcatcatatt |
160 |
Q |
| |
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|||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
56536779 |
accattgaggttgtctataatgcaaatctcgaaatcaccaaaaagcctgtacctgacttcaggtaaataaatagactatatgccatataatcatcatatt |
56536878 |
T |
|
| Q |
161 |
gtcatgtcaatgtactcgatgagagcatcttggtcatgatgtttatggatattaatttcagtttctatgatcgttcatctccaatttacacccaaccgcg |
260 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
56536879 |
gtcatgtcagtgtactctattagagcatcttggtcacggtgtcaatggatgttaatttcagtttctatgatcgttcatctccaatttacactcaaccgcg |
56536978 |
T |
|
| Q |
261 |
atatttgcctccatcaaagatgct |
284 |
Q |
| |
|
|| ||||||||| || |||||||| |
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| T |
56536979 |
atgtttgcctccgtcgaagatgct |
56537002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 22761341 - 22761121
Alignment:
| Q |
3 |
tgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatctcggaatcaccaaa |
102 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |
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| T |
22761341 |
tgtgaaaaattcatacgtgtaagcttacttatatgatggctaccgggaagacattggtatcgttgaggctttcaataatgcaaatctcggaatcaccaaa |
22761242 |
T |
|
| Q |
103 |
aagcctgtacctgacttcaggtaaataaataggctatatgccatataatcatcatattgtcatgtcaatgtactcgatgagagcatcttggtcatgatgt |
202 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |
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|
| T |
22761241 |
tagcatgtacctgacttcaggtaaataaataggctctatacaatataatcatcatattgtcatgtcaatgcactttatgagagcatcttggtcatggtgt |
22761142 |
T |
|
| Q |
203 |
ttatggatattaatttcagtt |
223 |
Q |
| |
|
||||||||||||||||||| |
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| T |
22761141 |
caatggatattaatttcagtt |
22761121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 37078820 - 37078929
Alignment:
| Q |
17 |
aggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatctcggaatcaccaaaaagcctgtacctga |
116 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| || |
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| T |
37078820 |
aggtgcaagcttatttatacgatggatactgggaagacatcggtacaattgaggctttctataatgcaaatctgggaatcaccaaaaagccagtaccgga |
37078919 |
T |
|
| Q |
117 |
cttcaggtaa |
126 |
Q |
| |
|
|| |||||| |
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|
| T |
37078920 |
ttttaggtaa |
37078929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 37079028 - 37079093
Alignment:
| Q |
219 |
cagtttctatgatcgttcatctccaatttacacccaaccgcgatatttgcctccatcaaagatgct |
284 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||| |
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| T |
37079028 |
cagtttctatgatcgttcatctccaatctacacccaacctcggtatttgcctccatctaagatgct |
37079093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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