View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_3 (Length: 880)
Name: NF11750_low_3
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 247 - 863
Target Start/End: Original strand, 27644128 - 27644756
Alignment:
| Q |
247 |
aatcaaaggaatagttcaacaatgacgcattgttgacatataagaatccaaaatcaagaaaattagtgttgatttgtaaaagtattatgaataaacaaga |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644128 |
aatcaaaggaatagttcaacaatgacgcattgttgacatataagaatccaaaatcaagaaaattagtgttgatttgtaaaagtattatgaataaacaaga |
27644227 |
T |
|
| Q |
347 |
accaccaacgcactaaaaccaaaaacaaactcaaattgtattattagggcaaaggtaacatttgtaatttcaattcataatttcaacaatggggacaaaa |
446 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| |
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| T |
27644228 |
accaccaacgcactaaaaccacaaacaaactcaaattgtattattagggcaaaggtaacatttgtaatttcaattcatgatttcaacattggggaaaaaa |
27644327 |
T |
|
| Q |
447 |
--ccctaattctgtttcataa----------------taactattctattcaatttgatcctcctcaacatcttttttatcctcaactttatcttcaatc |
528 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27644328 |
aaccctaattatgtttcataagaaaaacatatcataataactattctattcaatttgatcctcctcaacatcttttttattctcaactttatcttcaatc |
27644427 |
T |
|
| Q |
529 |
ttttcatcggcgtcctcgtcctcgtcctcgtcttcatcttcatcttcatcaactcctgtaaaagtccaagcaagttcttcacgaagtttttcctcttctc |
628 |
Q |
| |
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|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27644428 |
ttttcatcggcgtcctcgtcttcatc------ttcatcttcatcttcatcaactcctgtaaaagtccaagcaagttcttcacgaagcttttcctcttctc |
27644521 |
T |
|
| Q |
629 |
ccggcaaaaactcagtatcctcaactccaaaatacttcctcacatactcaacactcttgttcgcaattcgatcagcaataacctgactcgtaaaatcaag |
728 |
Q |
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| T |
27644522 |
ccggcaaaaactcagtatcctcaactccaaaatacttcctcacatactcaacactcttgttcgcaattcgatcagcaataacctgactcgtaaaatcaag |
27644621 |
T |
|
| Q |
729 |
aagcttcttcatatccaagtaattagcagcaagaaaaagatccttcacctcttcattgtcgagattcttcacgaactcggcttcgaaggccttgttgatc |
828 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644622 |
aagcttcttcatatccaagtaattagcagcaagaaaaagatccttcacctcttcattgtcgagattcttcacgaactcggcttcgaaggccttgttgatc |
27644721 |
T |
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| Q |
829 |
tctccagcgacattcttctcacaatactcgattat |
863 |
Q |
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| T |
27644722 |
tctccagcgacattcttctcgcaatactcgattat |
27644756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 556 - 856
Target Start/End: Original strand, 27548945 - 27549245
Alignment:
| Q |
556 |
tcgtcttcatcttcatcttcatcaactcctgtaaaagtccaagcaagttcttcacgaagtttttcctcttctcccggcaaaaactcagtatcctcaactc |
655 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
27548945 |
tcgtcttcatcttcatctttgtcaactcctgtaaaactccaagcaagttcttcacgaagcttttcctcttctcccggcaaaaactcagtatcctcaatgc |
27549044 |
T |
|
| Q |
656 |
caaaatacttcctcacatactcaacactcttgttcgcaattcgatcagcaataacctgactcgtaaaatcaagaagcttcttcatatccaagtaattagc |
755 |
Q |
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| T |
27549045 |
caaaatacttcctcacatactccacactcttgttctcaattcgatcagcaataacctggctcgtaaaatcaagaagcttcttcgtatccaagtaattagc |
27549144 |
T |
|
| Q |
756 |
agcaagaaaaagatccttcacctcttcattgtcgagattcttcacgaactcggcttcgaaggccttgttgatctctccagcgacattcttctcacaatac |
855 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27549145 |
agcaagaaaaagatccttcacctcttcattgtcgagattcttcacgaactcagcttcgaaggccttgttgatctctccagcgacattcttttcacaatac |
27549244 |
T |
|
| Q |
856 |
t |
856 |
Q |
| |
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| |
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|
| T |
27549245 |
t |
27549245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 27643958 - 27644130
Alignment:
| Q |
5 |
ttgtcgcaatgttgctgttataatatcctcgcaacattgcagcgcgattttcaatcatgtgtacagccggattgtgaccaaatcatgaaccacatcagag |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
27643958 |
ttgtcgcaatgttgctgttataatatcctcgcaacattgcagtgtgattttcaatcatgcgtacaaccggattgtgaccaaatcatgaaccacatcagag |
27644057 |
T |
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| Q |
105 |
gatttcagccattttggttcaaatcttcacactattaaactgtaatgagcgcaatcacatccgtgaccgcaat |
177 |
Q |
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| T |
27644058 |
gatttcagccattttggttcaaatcttcacactattaaactgtaatgagcacaatcacatctgtgaccgcaat |
27644130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 326 - 465
Target Start/End: Original strand, 27548728 - 27548868
Alignment:
| Q |
326 |
aagtattatgaataaacaagaaccaccaacgcactaaaaccaaaaacaaactcaaattgtattattagggcaaaggtaacatttgtaatttcaattcata |
425 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548728 |
aagtattatgaataaacaagaaccaccaacgcactaaaactaaaaacaaacccaaattgtattattagggcaaaggtaacatttgtaatttcaattcata |
27548827 |
T |
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| Q |
426 |
atttcaacaatgggg-acaaaaccctaattctgtttcataa |
465 |
Q |
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||||||||| ||||| | |||||| |||||||||||||||| |
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| T |
27548828 |
atttcaacattggggaaaaaaaccataattctgtttcataa |
27548868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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