View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_33 (Length: 271)
Name: NF11750_low_33
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 11200517 - 11200279
Alignment:
| Q |
15 |
atgaaacttaaatccttaacataatcaacaagtaatatactaaaattctcaatccaaccaaataagnnnnnnnntatttgtaagtcagccaagattaacg |
114 |
Q |
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| T |
11200517 |
atgaaacttaaatccttaacataatcaacaagtaatatactaaaattctgaatccaaccaaataagaaaaaaa-tatttttaagtcagccaagattaacg |
11200419 |
T |
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| Q |
115 |
aagatgctaannnnnnnggagttaattaagatgctaaattgtaaatgatttaattccaaaattatattttgattcattattttctattttgcataaataa |
214 |
Q |
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| T |
11200418 |
aagatgctaatttttttggagttaattaagatgctaaattgtacatgatttaattccaaaattatattttgattcattaatttctattttgcataaataa |
11200319 |
T |
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| Q |
215 |
ttgcaacacaaacacatacattataccagagagtacaact |
254 |
Q |
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| T |
11200318 |
ttgcaacacaaacacatacattatactagagagtacaact |
11200279 |
T |
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