View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_37 (Length: 242)
Name: NF11750_low_37
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 15556978 - 15556795
Alignment:
| Q |
40 |
tttaaattttcaagccattcctatcccattttaacccatacaagttttcaagttacattacatctatcttccaacctcaataacattcatatgttcctgt |
139 |
Q |
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| T |
15556978 |
tttaaattttcaagccattcctatcccattttaacccatacaagttttcaagttacattacatctatcttccaacctcaataacattcatatgttcctgt |
15556879 |
T |
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| Q |
140 |
acttttgcttttcagatcacattttctaccatgtcaccatatacactatcataattgatcacttaagagcaatctttattataca |
224 |
Q |
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| T |
15556878 |
acttttgc-tttcagatcccattttctcccatgtcaccatatacagtatcataattgatcactaaagagcaatctttattataca |
15556795 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 46506272 - 46506325
Alignment:
| Q |
1 |
atgtttcaaaataagttctagaatcttttccctgtttgctttaaattttcaagc |
54 |
Q |
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| T |
46506272 |
atgtttcaaagtaagttctacaatgttttccctctttgcttataattttcaagc |
46506325 |
T |
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