View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11750_low_38 (Length: 241)
Name: NF11750_low_38
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_38 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 41326548 - 41326327
Alignment:
| Q |
17 |
aaaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41326548 |
aaaatctgcatctttatttgatgattccaaaacatca---ttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaac |
41326452 |
T |
|
| Q |
117 |
tcatgtagttttgcatttaaaagagaaatggaactctgaagtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41326451 |
tcatgtagttttgcatttaaaagagaaatggaactctgaagtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttat |
41326352 |
T |
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| Q |
217 |
cttactattttttccttttctctcc |
241 |
Q |
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||||||||| |||||||||||||| |
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| T |
41326351 |
cttactattgcttccttttctctcc |
41326327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 42312766 - 42312543
Alignment:
| Q |
18 |
aaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42312766 |
aaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaact |
42312667 |
T |
|
| Q |
118 |
catgtagttttgcatttaaaagagaaatggaactctgaagtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42312666 |
catgtagttttgcatttaaaagagaaatggaactatgaagcagaaattagcctacacattggtgtttgcgtatatttttagttcatttgtaagtgttatc |
42312567 |
T |
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| Q |
218 |
ttactattttttccttttctctcc |
241 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
42312566 |
ttactattgcttccttttctctcc |
42312543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 20909653 - 20909429
Alignment:
| Q |
17 |
aaaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20909653 |
aaaatctgcatctttatttgatgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaac |
20909554 |
T |
|
| Q |
117 |
tcatgtagttttgcatttaaaagagaaatggaactctgaagtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20909553 |
tcatgtagttttgcatttaaaagagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttat |
20909454 |
T |
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| Q |
217 |
cttactattttttccttttctctcc |
241 |
Q |
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||| ||||| |||||||||||||| |
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| T |
20909453 |
cttgctattgcttccttttctctcc |
20909429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 20924101 - 20923877
Alignment:
| Q |
17 |
aaaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaac |
116 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20924101 |
aaaatctgcatctttatttgatgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaac |
20924002 |
T |
|
| Q |
117 |
tcatgtagttttgcatttaaaagagaaatggaactctgaagtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20924001 |
tcatgtagttttgcatttaaaagagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttat |
20923902 |
T |
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| Q |
217 |
cttactattttttccttttctctcc |
241 |
Q |
| |
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||| ||||| |||||||||||||| |
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| T |
20923901 |
cttgctattgcttccttttctctcc |
20923877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 27445358 - 27445567
Alignment:
| Q |
33 |
tttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcat |
132 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
27445358 |
tttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactagctcatgtagttctgcat |
27445457 |
T |
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| Q |
133 |
ttaaaagagaaat--ggaactctgaagtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattttttc |
230 |
Q |
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|||||| || ||| || | ||||||| || |||| || | | | |||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27445458 |
ttaaaa-agtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttactattgcttc |
27445556 |
T |
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| Q |
231 |
cttttctctcc |
241 |
Q |
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||||||||||| |
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| T |
27445557 |
cttttctctcc |
27445567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 35330 - 35121
Alignment:
| Q |
33 |
tttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcat |
132 |
Q |
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|
||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||| |
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| T |
35330 |
tttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactaactcatgtatttctgcat |
35231 |
T |
|
| Q |
133 |
ttaaaagagaaat--ggaactctgaagtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattttttc |
230 |
Q |
| |
|
|||||| || ||| || ||||||||| || |||| || | | | |||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35230 |
ttaaaa-agtaatagggcactctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttactattgcttc |
35132 |
T |
|
| Q |
231 |
cttttctctcc |
241 |
Q |
| |
|
||||||||||| |
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| T |
35131 |
cttttctctcc |
35121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 42000 - 41791
Alignment:
| Q |
33 |
tttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcat |
132 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
42000 |
tttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactagctcatgtagttctgcat |
41901 |
T |
|
| Q |
133 |
ttaaaagagaaat--ggaactctgaagtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattttttc |
230 |
Q |
| |
|
|||||| || ||| || | ||||||| || |||| || | | | |||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41900 |
ttaaaa-agtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttactattgcttc |
41802 |
T |
|
| Q |
231 |
cttttctctcc |
241 |
Q |
| |
|
||||||||||| |
|
|
| T |
41801 |
cttttctctcc |
41791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 11504723 - 11504843
Alignment:
| Q |
33 |
tttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcat |
132 |
Q |
| |
|
||||||||||| ||||||| | |||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||||||||| ||| |
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| T |
11504723 |
tttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaactaactcatgtagtttttcat |
11504822 |
T |
|
| Q |
133 |
ttaaaagagaaatggaactct |
153 |
Q |
| |
|
||||||| ||||||| ||||| |
|
|
| T |
11504823 |
ttaaaagggaaatggcactct |
11504843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 50717679 - 50717744
Alignment:
| Q |
175 |
attggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattttttccttttctctcc |
241 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||||||||| |||| ||||||||| |||| |
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|
| T |
50717679 |
attggtgtttgcatatttttttagttc-tttgtaagtgttatcttattattgattccttttcactcc |
50717744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 50795169 - 50795104
Alignment:
| Q |
175 |
attggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattttttccttttctctcc |
241 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||||||||| |||| ||||||||| |||| |
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|
| T |
50795169 |
attggtgtttgcatatttttttagttc-tttgtaagtgttatcttattattgattccttttcactcc |
50795104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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