View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_4 (Length: 702)
Name: NF11750_low_4
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 112 - 466
Target Start/End: Complemental strand, 41969573 - 41969222
Alignment:
| Q |
112 |
gatggaacacctcccttaattttcgaattctattgttgaataaatcaaacacatcaaattctccaagtccaaccttagagtaagtccaaccatatattga |
211 |
Q |
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| T |
41969573 |
gatggaacgcctcccttaattttcgaattctattgttgaataaatcaaacacatcaaattctccaagtccaaccttagagtaagtccaaccatatattga |
41969474 |
T |
|
| Q |
212 |
gctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaactcaacgtt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41969473 |
gctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaactcaacgtt |
41969374 |
T |
|
| Q |
312 |
tcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttgtgttgtt |
411 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41969373 |
tcttcataatcacaattcacataacttttttgcttttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttg---tgtt |
41969277 |
T |
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| Q |
412 |
tcttcttgtacagagcaaggtaaatcgacatattattatgctatgcatatttatc |
466 |
Q |
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| T |
41969276 |
tcttcttgtacagagcaaggtaaatcgacatattattatgctatgaatatttatc |
41969222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 505 - 693
Target Start/End: Complemental strand, 41969181 - 41968993
Alignment:
| Q |
505 |
accttcgtccataattttatttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatt |
604 |
Q |
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| T |
41969181 |
accttcgtccataattttatttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatt |
41969082 |
T |
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| Q |
605 |
tcgattgttatggatgctgccaaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttct |
693 |
Q |
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| T |
41969081 |
tcgattgttaccggtgctgccaaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttct |
41968993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 41969663 - 41969591
Alignment:
| Q |
15 |
aatatagaccaaaatcatttaactagcttgtatcaagaaatcgaaaatacagtaagcactattatagacctcc |
87 |
Q |
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| T |
41969663 |
aatatagaccaaaatcatttaactagcttgtatcaagaaatcgaaaatacagtaagcactattatagatctcc |
41969591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 3e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 193 - 443
Target Start/End: Complemental strand, 1236555 - 1236305
Alignment:
| Q |
193 |
aagtccaaccatatattgagctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaa-atgcta |
291 |
Q |
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||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |
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| T |
1236555 |
aagtccaaccatagattcagctaaaggtggctctaggtggatctttcatcactaaaatagagcca-cctttcatagattcagttcatgtagaatttgcta |
1236457 |
T |
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| Q |
292 |
taaatacgtaactcaac---gtttcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaat |
388 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1236456 |
taaatacgtaactcaacaattcttcttcataatcacaattcacataacttttttgcttttagtaaagctttgagtaatggcaaaaaattataacatcaat |
1236357 |
T |
|
| Q |
389 |
atgctcttcttagttgtgttgtttcttcttgtacagagcaaggtaaatcgacata |
443 |
Q |
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| T |
1236356 |
atgctcttcttagttg---tgtttcttcttgtacaaagcaaggtatattgacata |
1236305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 1236713 - 1236644
Alignment:
| Q |
16 |
atatagaccaaaatcatttaactagcttgtatcaagaaatcgaaaatacagtaagcactattatagacct |
85 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1236713 |
atatagaccaaaataatttaactagcttgtatcaagaaatcgaaaatattgtaagcactattatagacct |
1236644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 505 - 591
Target Start/End: Complemental strand, 1236237 - 1236150
Alignment:
| Q |
505 |
accttcgtccataattttatttttggatataagttttt-cctttaaatatgtgaatcacaagtataatatttataaacttgatcaagg |
591 |
Q |
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| T |
1236237 |
accttcgtctataattttatttttgtatataaattttttcctttaaacatgtgaatcacaagtataatatttattaacttgatgaagg |
1236150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 1236618 - 1236577
Alignment:
| Q |
120 |
acctcccttaattttcgaattctattgttgaataaatcaaac |
161 |
Q |
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| T |
1236618 |
acctcccttaattttcgaatgctattgttgaattaatcaaac |
1236577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 625 - 698
Target Start/End: Original strand, 3722450 - 3722523
Alignment:
| Q |
625 |
caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctctctc |
698 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||| |||| |
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| T |
3722450 |
caaaacattgcacaattaccctcaccatttcctctcactcacctcacattattctttataggttcttctttctc |
3722523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 677
Target Start/End: Original strand, 7805573 - 7805618
Alignment:
| Q |
632 |
ttgcacaattaccctcaccatttactcccactcacctcactttatt |
677 |
Q |
| |
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|||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
7805573 |
ttgcacaattaccctcaccactttctctaactcacctcactttatt |
7805618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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