View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11750_low_41 (Length: 238)
Name: NF11750_low_41
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_41 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24066173 - 24065951
Alignment:
| Q |
1 |
attaactaattatctaaagagaatatggagacagaaagacagctccaagtttcttcaaattctaggcagcacaatggaggaacttctttcttcaaaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24066173 |
attaactaattatctaaagagaatatggagactgaaagacagctccaagtttcttcaaattctaggcagcacaatggaggaacttctttcttcaaaactt |
24066074 |
T |
|
| Q |
101 |
gtttcaatggactcaacgccttggcaggttttcatattctcactttctcaaactcttctatatgaaaactacttaatcacaagtcatgtgtgcaaaaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24066073 |
gtttcaatggactcaacgccttggcaggttttcatattctcactttctcaaactcttatatatgaaaactacttaatcacaagtcatgtgtgcaaaaagt |
24065974 |
T |
|
| Q |
201 |
aaagaactatcacatgcatcatc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
24065973 |
aaagaactatcacatgcatcatc |
24065951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 24018743 - 24018617
Alignment:
| Q |
3 |
taactaattatctaaagagaatatggagacagaaagacagctccaagtttcttcaaattctaggcagcacaatggaggaacttctttcttcaaaacttgt |
102 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||||| |||||||||||||| |||||||| |||||||||| | |||||| ||||| ||||||||||| |
|
|
| T |
24018743 |
taactaattatctagagagaaaatggagatagaaaggcagctccaagtttcatcaaattcagggcagcacaaagaaggaacctcttttatcaaaacttgt |
24018644 |
T |
|
| Q |
103 |
ttcaatggactcaacgccttggcaggt |
129 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
24018643 |
ttcaatggactcaatgccttggcaggt |
24018617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 24076027 - 24075918
Alignment:
| Q |
18 |
agagaatatggagacagaaagacagctccaagtttcttcaaattctaggcagcacaatggaggaacttctttcttcaaaacttgtttcaatggactcaac |
117 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||||| ||||| |||||| |||| |||||| ||||| | |||||||||||| ||||||||||| |
|
|
| T |
24076027 |
agagaatatggacacagaaagccagctccaggtttcg---aattcagagcagcagaatgaaggaacctctttttctaaaacttgtttccatggactcaac |
24075931 |
T |
|
| Q |
118 |
gccttggcaggtt |
130 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24075930 |
gccttggcaggtt |
24075918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 23247346 - 23247306
Alignment:
| Q |
91 |
ttcaaaacttgtttcaatggactcaacgccttggcaggttt |
131 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
23247346 |
ttcaaaacttgtttcaatggactcaatgccttgacaggttt |
23247306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University