View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_44 (Length: 219)
Name: NF11750_low_44
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 36324272 - 36324460
Alignment:
| Q |
19 |
aaattggtggatccatttgcacaggttcttggacaaagcagccatagaaagaaaatctgatgtacaacttgaaaagcaagagaatccaagcccatggaaa |
118 |
Q |
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| T |
36324272 |
aaattgatggatccatttgcacaggttcttggacaaagcagccatagaaagaaaatctgatgtacaacttgaaaagcaagagaatccaagcccatggaaa |
36324371 |
T |
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| Q |
119 |
ctatgcagagttacacaagtagaaaatgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgactctctgctt |
207 |
Q |
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| T |
36324372 |
ctatgcagagttacacaagtagaaaatgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgactctttgctt |
36324460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 36331546 - 36331721
Alignment:
| Q |
35 |
ttgcacaggttcttggacaaagcagccatagaaagaaaatctgatg---tacaacttgaaaagcaagagaatccaagcccatggaaactatgcagagtta |
131 |
Q |
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| T |
36331546 |
ttgcacaggttcttggacaaagcagccattgaaagaaaatctgatgatttacaatctgaaaaacaagagattccaaatccatggaaactatgcagagtta |
36331645 |
T |
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| Q |
132 |
cacaagtagaaaatgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgactctctgctt |
207 |
Q |
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| T |
36331646 |
cacaagtagaaaatgccaaaataatcctaagcatgattccaatattctgttgcacaatcataatgactctttgctt |
36331721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 5459620 - 5459713
Alignment:
| Q |
105 |
caagcccatggaaactatgcagagttacacaagtagaaaatgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgac |
198 |
Q |
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| T |
5459620 |
caagtccatggaaactttgcagggttacacaagtagaaaatgccaaaatccttctcagcatggttccaatattctgttgtacaattataatgac |
5459713 |
T |
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