View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11750_low_6 (Length: 683)
Name: NF11750_low_6
Description: NF11750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11750_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 11 - 669
Target Start/End: Original strand, 43689480 - 43690136
Alignment:
| Q |
11 |
cagagacatgaaaaaggctatgaaagtgaaagaaaaaattcaagaggagagtccttatgctgaggttattctattggagattgatcttagctctcttgct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43689480 |
cagagacatgaaaaaggctatgaaagtgaaagaaaaaatccaagaggagagtccttatgctgaggttattctattggagattgatcttagctctcttgct |
43689579 |
T |
|
| Q |
111 |
tctgtacaaagattttgttcggagtttttagctttagaattgccccttaatattctcatgtaagtgcttttattgannnnnnnnnnnnnccttattgtca |
210 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43689580 |
tctgtacaaagattttgttcagagtttttagctttagaattgccccttaatattctcatgtaagtgcttttattgattttttttctt--ccttattgtca |
43689677 |
T |
|
| Q |
211 |
tttcatttgcttttgattcatcagttgagaaaagggagatccgggttttaaattgtagtcagattgcaatttttatattgtagagaattgtgatcaaatg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43689678 |
tttcatttgcttttgattcatcagttgagaaaagggatatccgggttttaaattgtagtcagattgcaatttttatattgtagagaattgtgataaaatt |
43689777 |
T |
|
| Q |
311 |
tggccgatgcaacctcaattgtgattatattgtggtttcgaaaatataaaaaacttttatgttgcaccctagatcgcagtcacaaatctctatctaaata |
410 |
Q |
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| T |
43689778 |
tggccgatgcaacctcaattgtgattatattgtggtttcgaaaatataaaa-acttttatgttgcaccatagatcgcagtcgcaaatctctatctaaata |
43689876 |
T |
|
| Q |
411 |
tttgttctagtttattcatgttgtgctaataattgattgaaattaataaatttgttttgcagaaacaatgcaggagtgtactctcataacctggaattct |
510 |
Q |
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| T |
43689877 |
tttgttctagtttattcatgttgtgctaataatttattgaaattaataaatttgttttgcagaaacaatgcaggagtgtactctcataacctggaattct |
43689976 |
T |
|
| Q |
511 |
ccgaagagaaaattgaattgacatttgctacaaattacttaggtac-tttttcattcttacctatgagaggttgaaaagcaatgctaaatctttgacaac |
609 |
Q |
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| T |
43689977 |
ccgaagagaaaattgaattgacatttgctacaaattacttaggtacttttttcattcttacctatgagaggttgaaaagcaatgctaaatctttgacaac |
43690076 |
T |
|
| Q |
610 |
atctgcagaatatgaatgccacgccatttagtttgtactcctttacaaaagacaaaaatg |
669 |
Q |
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| T |
43690077 |
atctgcagaatatgaatgccacgccatttagtttgtactcctttacaaaagacaaaaatg |
43690136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 630
Target Start/End: Original strand, 43693244 - 43693402
Alignment:
| Q |
454 |
taataaatttgttttgcagaaacaa-tgcaggagtgtactctcataacctggaattctccgaagagaaaattgaattgacatttgctacaaattacttag |
552 |
Q |
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| T |
43693244 |
taataaatttggtttacagaaacaaatgcaggagtatattctcagaacct------ctccgaagagaaaattgaaatgacatttgct----------tag |
43693327 |
T |
|
| Q |
553 |
gtacttttt-cattcttacctatgagaggttgaaaagcaatgctaaatctttgacaacatctgcagaatatgaatgcca |
630 |
Q |
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| T |
43693328 |
gtacttttttcattattatct----gagattgaaaagcaatgccaaatctttgactacatcagcataatctgaatgcca |
43693402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 34747976 - 34748132
Alignment:
| Q |
19 |
tgaaaaaggctatgaaagtgaaagaaaaaattcaagaggagagtccttatgctgaggttattctattggagattgatcttagctctcttgcttctgtaca |
118 |
Q |
| |
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|||| ||||| |||||||||| ||| || || ||| | |||||||| |||||||||||||||| ||||||||||||||||||||| || ||||||||| |
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| T |
34747976 |
tgaagaaggcaatgaaagtgagagacaatatacaaaaagagagtccaaatgctgaggttattctgttggagattgatcttagctctttttgttctgtaca |
34748075 |
T |
|
| Q |
119 |
aagattttgttcggagtttttagctttagaattgccccttaatattctcatgtaagt |
175 |
Q |
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| T |
34748076 |
aagattttgttctgattttttagctttagatcttccacttaatattctaatgtaagt |
34748132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 516 - 556
Target Start/End: Original strand, 34748297 - 34748337
Alignment:
| Q |
516 |
gagaaaattgaattgacatttgctacaaattacttaggtac |
556 |
Q |
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| T |
34748297 |
gagaaaattgagatgacatttgccacaaattacttaggtac |
34748337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 7970833 - 7970715
Alignment:
| Q |
57 |
gagagtccttatgctgaggttattctattggagattgatcttagctctcttgcttctgtacaaagattttgttcggagtttttagctttagaattgcccc |
156 |
Q |
| |
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|||||||| |||||||||||||||| ||||| |||| ||||||||| || |||||||| ||||||||||||| || |||||||||||||| | || | |
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| T |
7970833 |
gagagtccaaatgctgaggttattctgttggaaattggtcttagctccttttcttctgtataaagattttgttctgattttttagctttagatcttccgc |
7970734 |
T |
|
| Q |
157 |
ttaatattctcatgtaagt |
175 |
Q |
| |
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|||||||||| |||||||| |
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| T |
7970733 |
ttaatattctaatgtaagt |
7970715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 10775931 - 10775976
Alignment:
| Q |
284 |
tatattgtagagaattgtgatcaaatgtggccgatgcaacctcaat |
329 |
Q |
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| T |
10775931 |
tatattgtagagaactgtgatcaaatgcggccgatgccacatcaat |
10775976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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