View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11751_high_10 (Length: 418)
Name: NF11751_high_10
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 4711924 - 4712306
Alignment:
| Q |
18 |
gagtttaagcatgtgaattcggtggataaagtagaattagctggcactggcatactcttcctcccaagtttgcatgcaacaaagctgacaaaaatgttac |
117 |
Q |
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| T |
4711924 |
gagtttaagcatgtgaattcggtggataaagtagaattagctggcactggcatactcttcctcccaagtttgcatgcaacaaagctgacaaaaatgttac |
4712023 |
T |
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| Q |
118 |
tttgaattatgtatgccaaatggaaaacgttccaaaactttggtttttccttttatacataaaactgataagcttgaaaaagttgcaacaacacaacaca |
217 |
Q |
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| T |
4712024 |
tttgaattatgtatgccaaatggaaaacgttccaaaactttggtttttccttttatacataaaactgataagcttgaaaaagttgcaacaacacaacaca |
4712123 |
T |
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| Q |
218 |
aaaagtaacttcacctttcatttactactccttatgataagctatctaaaattacatgcaaacgatataaacacaaccgagtcattcatgaatttataat |
317 |
Q |
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| T |
4712124 |
aaaagtaacttcacctttcatttactactccttatgataagctatctaaaattacatgcaaacgatataaacacaaccgagtcattcatgaatttataat |
4712223 |
T |
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| Q |
318 |
taaccnnnnnnnnnnnnnnnccactaatgatgaggtttctcaaacctctacgccaccaacaccaacacctttctccagctatc |
400 |
Q |
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| T |
4712224 |
taaccttttttgttttttttcaactaacgacgaggtttctcaaacctctacgccaccaacaccaacacctttctccagctatc |
4712306 |
T |
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