View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11751_high_24 (Length: 252)
Name: NF11751_high_24
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_high_24 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 34050649 - 34050885
Alignment:
| Q |
15 |
gaccccatcacttcctgttctctttcttcccacaagataataacactactattcacatcaattatcatatgcaacatcattagccaattaaattcaattt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
34050649 |
gaccccatcacttcctgttctctttcttcc-acaagataataacactactattcgcatcaattctcatatgcaacatcaatagtcaattaaattcaattt |
34050747 |
T |
|
| Q |
115 |
atacttaaattaaatgaataatcactccacataacctaaaataacaactaatttttgttaaaatttgatcattttggttctgagtagtatatattaaaaa |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34050748 |
gtacttaaattaaataaataatcactccacataacctaaaatagcaactaatttttgttaaaatttgatcattttggttctgattagtatatattaaaaa |
34050847 |
T |
|
| Q |
215 |
caaagactttatagaacccaaaaaaggaatccaaattc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34050848 |
caaagactttatagaacccaaaaaaggaatccaaattc |
34050885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University