View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11751_high_5 (Length: 540)
Name: NF11751_high_5
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 34919717 - 34919193
Alignment:
| Q |
1 |
aatcgaattgggtgcattcgtattcgccgttgcttgcaatttggccaccgagtgattctaattattcgttgactgatgttgtggcgaagatgaatgaagg |
100 |
Q |
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| T |
34919717 |
aatcgaattgggtgcattcgtattcgccgttgcttgcaatttggccaccaagtgattctaattattcgttgactgatgttgtggcgaagatgaatgaagg |
34919618 |
T |
|
| Q |
101 |
gttgagttcgggtaaagttgagaatgggaataagttgaaggtgtttttgaaggaagatttgccgaaacggcttcattatgcggagagtgataggattccg |
200 |
Q |
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| T |
34919617 |
gttgagttcgggtaaagttgagaatgggaataagttgaaggtgtttttgaaggaagatttgccgaagcggcttcattatgcggagagtgataggattccg |
34919518 |
T |
|
| Q |
201 |
ccgattattgggttggttcatgagggttataaggtggagcagagtaggacagggaagaaagagtgtggtggtgctcatggttatgataatgaatttttct |
300 |
Q |
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| T |
34919517 |
ccgattattgggttggttcatgagggttataaggtggagcagagtaggacagggaagaaagagtgtggtggtgctcatggttatgataatgaatttttct |
34919418 |
T |
|
| Q |
301 |
ctatgaggactatttttattggacatggtcctcaatttgaaagagggaagaagataccttcgtttgagaatgttgaaatttataacttgattacttctat |
400 |
Q |
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| T |
34919417 |
ctatgaggactatttttattggacatggtcctcaatttgaaagagggaagaagataccttcgtttgagaatgttgaaatttataacttgattacttctat |
34919318 |
T |
|
| Q |
401 |
actcaacattaagggtgcgcctaataatggatctgactcatttccgcaatctgttcttctaccaaaggcttaataatgctcgaagttcggtgtttctgag |
500 |
Q |
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| T |
34919317 |
actcaacattaagggtgcgcctaataatggatctgactcatttccgcaatctgttcttctaccgaaggcttaataatgctcgaagttcggtgtttctgag |
34919218 |
T |
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| Q |
501 |
ctgcttgtgcttgacagtatgttct |
525 |
Q |
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| T |
34919217 |
ctgcttgtgcttgacagtatgttct |
34919193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 34917384 - 34917330
Alignment:
| Q |
472 |
aataatgctcgaagttcggt-gtttctgagctgcttgtgcttgacagtatgttct |
525 |
Q |
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| T |
34917384 |
aataatactcgaaatttggtagtttctgagctgcttgtgcttgacagtatgttct |
34917330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 276 - 460
Target Start/End: Original strand, 42683395 - 42683579
Alignment:
| Q |
276 |
catggttatgataatgaatttttctctatgaggactatttttattggacatggtcctcaatttgaaagagggaagaagataccttcgtttgagaatgttg |
375 |
Q |
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| T |
42683395 |
catggttatgacaattcatttttctccatgaggagtatttttattggacatggtcctcaatttgcaagagggagaaagataccttcatttgagaatgttg |
42683494 |
T |
|
| Q |
376 |
aaatttataacttgattacttctatactcaacattaagggtgcgcctaataatggatctgactcatttccgcaatctgttcttct |
460 |
Q |
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| T |
42683495 |
agatttataatttgattacatctattctgaagataaagggtgcagctaataatggctctacctcatttgcagaatctgttcttct |
42683579 |
T |
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