View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11751_high_7 (Length: 515)
Name: NF11751_high_7
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 40531495 - 40531803
Alignment:
| Q |
1 |
attacataattgtactggtaaacattatacagtgtgagattgctcactatataactaaggtacactcctagagtttcttgagtcagttaggaagttgtaa |
100 |
Q |
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| T |
40531495 |
attacataattgtactggtaaacattatacagtgtgagattgctcactatataactaaggtacactcctagagtttcttgagtcagttaggaagttgtaa |
40531594 |
T |
|
| Q |
101 |
ctgattcaactatatattcattgaatcctttgtaatagttaacacttgaaacagaaaaacaaaaataatggaagttttgataacaaatgaaactctatgc |
200 |
Q |
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| T |
40531595 |
ctgattcaactatatattcattgaatcctttgtaatagttaacacttgaaacagaaaaacaaaaataatggaagttttgataacaaatgaaactctatgc |
40531694 |
T |
|
| Q |
201 |
atgtacttcacgttcaatgtattcaaccctaattaaactgcacctccaaatcccacataccatccatccgtacactctccaatttcacctgctatagatc |
300 |
Q |
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| T |
40531695 |
atgtacttcacgttcaatgtattcaaccctaattaaactgcacctccaaatcccacataccatccatccgtacactctcccatttcatctgctatagatc |
40531794 |
T |
|
| Q |
301 |
ttttgtttt |
309 |
Q |
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||| ||||| |
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| T |
40531795 |
tttagtttt |
40531803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 339 - 509
Target Start/End: Original strand, 40531798 - 40531971
Alignment:
| Q |
339 |
agttttcaccaagtgcattgaatactagttcataatttattttatttatttattcaaatcatccatttaattgatagactaagtatatgtcgtatccaac |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40531798 |
agttttcaccaagtgcattgaatactagttcataatttattttatttatttattcaaatcatccatttaattgatagactaagtatatgtcatatccaac |
40531897 |
T |
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| Q |
439 |
attataaaagtttagttaaagcatatattaattacactt---taataagtaaattaccatatcatcacctcgtc |
509 |
Q |
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| T |
40531898 |
attataaaagtttagttaaagcatatattaattacactttaataataagtaaattaccatatcatcacctcgtc |
40531971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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