View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11751_high_8 (Length: 499)
Name: NF11751_high_8
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 30579091 - 30578616
Alignment:
| Q |
8 |
caaaggaaagcaaaaaggaaaatgactttagcttcaaagaaactggaaaaagatacccttgattctaaatcaaagaaagcgaaggtcctcattgaggtaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30579091 |
caaaggaaagcaaaaaggaaaatgactttagcttcaaagaaactggaaaaagatacccttgattctaaatcaaagaaagcgaaggtcctcattgaggtag |
30578992 |
T |
|
| Q |
108 |
ttttatactgtttccttgtataaagtgatccgttcttttaaatgctattgggtattttgtcatgtactattatgaatcactttctgcgtacaacaactca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30578991 |
ttttatactgtttccttgtataaagtgatccgttcttttaaatgctattgggtattttgtcatgtactattatgaatcactttctgcgtacaacaactca |
30578892 |
T |
|
| Q |
208 |
accacttcttttgggaattttggtgtatatcattattcttatatttacaattgtcaacattctgttataatttgaaggctcctattactgattttaaata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30578891 |
accacttcttttgggaattttggtgtatatcattattcttatatttacaattgtcaacattctgttataatttgaaggctcctattactgattttaaata |
30578792 |
T |
|
| Q |
308 |
tatgatgctgctacaaactggattttcgttgctctgaactttcgagatagatgatgttggtagagtgcagaaatattttgtttgcgtttgaaaataaagt |
407 |
Q |
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| T |
30578791 |
tatgatgctgctacaaactggatttttgttgctctgaactttcgagatagatgatgttggtagagtgcagaaatattttgtttgcgtttgaaaataaagt |
30578692 |
T |
|
| Q |
408 |
tgatgccttcatttttgcatgctgacctcacaaagct-acctatgactgtcctttgtcttgcttggttgtgtttga |
482 |
Q |
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| T |
30578691 |
tgatgcctccatttttgcatgatgacctcacaaagctaacctatgactgtcctttgtcttgcttggttgtctttga |
30578616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 30583677 - 30583618
Alignment:
| Q |
15 |
aagcaaaaaggaaaatgactttagcttcaaagaaactggaaaaagatacccttgattcta |
74 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||| ||||| | | |||||||||||| |
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| T |
30583677 |
aagccaaaaggaaattgactttagtttcaaagaaacttgaaaaggctgcccttgattcta |
30583618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 434
Target Start/End: Original strand, 44595526 - 44595950
Alignment:
| Q |
11 |
aggaaagcaaaaaggaaaatgactttagcttcaaagaaactggaaaaagatacccttgattctaaatcaaagaaagcgaaggtcctcattgaggtaattt |
110 |
Q |
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| T |
44595526 |
aggaaagccaaaaggaaaatgactttagcttcaaagaaacttgaaaaggatgcccttgatactaaatcaaagaaaacgaaggtcctcattgaggtaattt |
44595625 |
T |
|
| Q |
111 |
tatactgtttccttgtataaagtg---------atccgttcttttaaatgctattgggtattttgtcatgtactattatgaatcactttctgcgtacaac |
201 |
Q |
| |
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| T |
44595626 |
aatactgtttccttgtataaactacaaaaaactatctgttcttttaattgctattgggtattttgtcttgcactgctatgaatcagtttctgtgtacgac |
44595725 |
T |
|
| Q |
202 |
aactcaaccacttcttttgggaattttggtgtatatcattattcttatatttacaattgtcaacattctgttataatttgaaggctcctattactgattt |
301 |
Q |
| |
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| T |
44595726 |
aactcaaccatttctttagggaattttgg-gcgtatcagaattcttatatatacagatgtcaatgttctgttataatttgaaggctcctgttactgattt |
44595824 |
T |
|
| Q |
302 |
taaatatatgatgctgctacaaactggattttcgttgctctgaactttcgagatagatgatgttggtagagtgcagaaatattttgtttgcgtttgaaaa |
401 |
Q |
| |
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|||||| |||| |||||||||||||| || | |||||||||||| | ||||||||||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
44595825 |
taaataaatga---tgctacaaactggaattgcattgctctgaactgttgagatagatgatgttggtaaagtgc----atattttgtttgagtttgaaaa |
44595917 |
T |
|
| Q |
402 |
taaagttgatgccttcatttttgcatgctgacc |
434 |
Q |
| |
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|| || |||||||| || ||||| ||| ||||| |
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|
| T |
44595918 |
tagagctgatgcctccagttttgtatgttgacc |
44595950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 220 - 434
Target Start/End: Complemental strand, 3859348 - 3859143
Alignment:
| Q |
220 |
gggaattttggtgtatatcattattcttatatttacaattgtcaacattctgttataatttgaaggctcctattactgattttaaatatatgatgctgct |
319 |
Q |
| |
|
|||||||||||||||| || |||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||| || | |||| |
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| T |
3859348 |
gggaattttggtgtat--cagaattcttatatattccgttgtcaatgttctgttataatttgaaggctcctattactgattttaaataaatta---tgct |
3859254 |
T |
|
| Q |
320 |
acaaactggattttcgttgctctgaactttcgagatagatgatgttggtagagtgcagaaatattttgtttgcgtttgaaaataaagttgatgccttcat |
419 |
Q |
| |
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|||||||||| || | ||||| |||||| | |||||||||||| ||||| ||| | |||||||||||| ||||||||||| || ||| |||| || |
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| T |
3859253 |
acaaactggaattgcattgctttgaactgttgagatagatgataatggtaaagt----acatattttgtttgagtttgaaaatagagctgaggcctccag |
3859158 |
T |
|
| Q |
420 |
ttttgcatgctgacc |
434 |
Q |
| |
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||||| ||| ||||| |
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| T |
3859157 |
ttttgtatgttgacc |
3859143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 424
Target Start/End: Complemental strand, 13381102 - 13380976
Alignment:
| Q |
291 |
attactgattttaaatatatgatgctgctacaaactggattttcgttgctctgaactttcgagatagatgatgttggtagagtgcagaaatattttgttt |
390 |
Q |
| |
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||||||||||||| ||| |||||||| |||||||||| || | ||| | |||||| | ||||||||||||||| ||| ||| || |||||||||| |
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| T |
13381102 |
attactgattttatataaatgatgct---acaaactggaattgcattgttttgaactgttgagatagatgatgtttgtaaagtaca----tattttgttt |
13381010 |
T |
|
| Q |
391 |
gcgtttgaaaataaagttgatgccttcatttttg |
424 |
Q |
| |
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| ||||||||||| || |||||||| || ||||| |
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| T |
13381009 |
gagtttgaaaatagagctgatgcctccagttttg |
13380976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 42682530 - 42682457
Alignment:
| Q |
242 |
attcttatatttacaattgtcaacattctgttataatttgaaggctcctattactgattttaaatatatgatgct |
316 |
Q |
| |
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||||||| || |||| ||||||| ||||||||||||| |||||| | || ||||||||||||||| |||||||| |
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| T |
42682530 |
attcttacatatacagttgtcaatgttctgttataattcgaaggcgcata-tactgattttaaataaatgatgct |
42682457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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