View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11751_low_15 (Length: 409)
Name: NF11751_low_15
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 5 - 409
Target Start/End: Complemental strand, 43366500 - 43366092
Alignment:
| Q |
5 |
ctagtccttttttcatctcatcaatttaattttgattgagtgtatttatttatatttctaattgttgcagaggctaatagcaaaactcatccggaccgat |
104 |
Q |
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| T |
43366500 |
ctagtccttttttcatctcatcaatttaattttgattgagtgtatttatttatatttctaattgttgcagaggctaatagcaaaactcatccggaccgat |
43366401 |
T |
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| Q |
105 |
acttgttaatcgcaaccagtggaggcttaaatcaacagagaacaggggtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatc |
204 |
Q |
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| T |
43366400 |
acttgttaatcgcaaccagtggaggcttaaatcaacagagaacaggggtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatc |
43366301 |
T |
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| Q |
205 |
cttttgatcaaata----aatataaaggaaggagttcagtgaggttaaagtattacttggaatatgtatatctttctttatgtaaccaaattgttttatt |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
43366300 |
cttttgatcaaataaataaatataaaggaaggagttcagtgaggttaaagtattacttggaatatgtatatctttctttatgtaaccaattttttttatt |
43366201 |
T |
|
| Q |
301 |
taagcatgaatagttcttccatttcattagtagacataattgcattctgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366200 |
taagcatgaatagttcttccatttcattagtagacataattgcattctgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgct |
43366101 |
T |
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| Q |
401 |
ataacttta |
409 |
Q |
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| T |
43366100 |
ataacttta |
43366092 |
T |
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