View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11751_low_16 (Length: 398)

Name: NF11751_low_16
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11751_low_16
NF11751_low_16
[»] chr1 (4 HSPs)
chr1 (1-371)||(29442534-29442904)
chr1 (13-360)||(29452537-29452884)
chr1 (4-358)||(29467013-29467367)
chr1 (1-360)||(29423818-29424177)
[»] chr2 (23 HSPs)
chr2 (1-344)||(14550924-14551266)
chr2 (140-293)||(8572754-8572910)
chr2 (207-371)||(10336621-10336785)
chr2 (1-86)||(12005619-12005704)
chr2 (168-311)||(10372653-10372796)
chr2 (1-92)||(12018377-12018468)
chr2 (1-86)||(11986982-11987067)
chr2 (208-374)||(9283343-9283512)
chr2 (168-289)||(9292699-9292820)
chr2 (145-348)||(9316770-9316976)
chr2 (224-324)||(17565336-17565436)
chr2 (216-324)||(9329418-9329526)
chr2 (166-376)||(10353914-10354127)
chr2 (1-86)||(12012047-12012132)
chr2 (236-348)||(9060296-9060408)
chr2 (226-364)||(7114824-7114965)
chr2 (217-324)||(7612716-7612823)
chr2 (217-304)||(12011835-12011922)
chr2 (223-347)||(10348629-10348753)
chr2 (1-44)||(9365199-9365242)
chr2 (13-45)||(8579035-8579067)
chr2 (207-342)||(9275333-9275468)
chr2 (217-311)||(8578760-8578854)
[»] chr8 (2 HSPs)
chr8 (117-293)||(41965975-41966154)
chr8 (1-38)||(41966263-41966300)
[»] scaffold0667 (1 HSPs)
scaffold0667 (126-311)||(5185-5373)
[»] chr4 (2 HSPs)
chr4 (168-376)||(26575650-26575861)
chr4 (13-41)||(561789-561817)
[»] chr3 (1 HSPs)
chr3 (168-348)||(37463293-37463473)
[»] chr5 (1 HSPs)
chr5 (222-302)||(36225575-36225655)


Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 29442904 - 29442534
Alignment:
Q  1 gggataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29442904 gggataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgc 29442805  T
Q  101 ggtagataggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcatcgatttggtagaaatcaaagttgtgtcgaaggattaa 200  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29442804 ggttgatgggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcttcgatttggtagaaatcaaagttgtgtcgaaggattaa 29442705  T
Q  201 ggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29442704 ggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggat 29442605  T
Q  301 tgtgccggtaacagagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaagg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29442604 tgtgccggtaacagagagaggattccggtaagtatctccggcggaagatccaccattggaaggaaggaagg 29442534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 29452884 - 29452537
Alignment:
Q  13 tgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgcggtagataggac 112  Q
    |||||||||||||||||||||||||||||||||||  |||||| || |||| |||||||||||||||||||||  |  ||||| |||  || | | ||      
T  29452884 tgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactgaacagagagatgttgttgttgggga 29452785  T
Q  113 ctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcatcgatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgag 212  Q
     | |||||||||  |||||||||| || ||||||||||||||||||||| | ||||||||||||| || |||||||||||||||||||||||||||||||    
T  29452784 gtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgtgtcgaaggattaaggaacgattgag 29452685  T
Q  213 gaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaac 312  Q
    | |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||    
T  29452684 ggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaac 29452585  T
Q  313 agagagaggattccggtaagtatctccggcggaagatccgccattgga 360  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29452584 agagagaggataccggtaagtatctccggcggaagatccgccattgga 29452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 358
Target Start/End: Complemental strand, 29467367 - 29467013
Alignment:
Q  4 ataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgcggt 103  Q
    |||||||| ||||||||||||||||| |||||||||||||||||  |||||  |||||||||||||||||||||||||||||| |  ||||| |||  ||    
T  29467367 ataatccgatgtttacggatgttaggattccagaaagcgattccgacattgatggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagt 29467268  T
Q  104 agataggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcatcgatttggtagaaatcaaagttgtgtcgaaggattaagga 203  Q
     | | ||   | |||||||||  |||||||||| || ||||||||||||||||||||| | |||||||||||||||  |||||||||||||||||||| |    
T  29467267 tgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaa 29467168  T
Q  204 acgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgt 303  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  29467167 acgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgt 29467068  T
Q  304 gccggtaacagagagaggattccggtaagtatctccggcggaagatccgccattg 358  Q
     ||||||||||||||| ||||||||| | ||| ||||| |||||||| |||||||    
T  29467067 accggtaacagagagatgattccggtgattatttccggaggaagatcagccattg 29467013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 29423818 - 29424177
Alignment:
Q  1 gggataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgc 100  Q
    |||||||| || ||||||| |||| |||||||||||||||||||| || ||| |||| | | ||||||||||||||||||||| || |  ||||| |||     
T  29423818 gggataatgcgatgtttacagatggtagggttccagaaagcgatttcaccatcggagaagaggcagagaaggccgttacatgatccgaccagagagatga 29423917  T
Q  101 ggtagataggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcatcgatttggtagaaatcaaagttgtgtcgaaggattaa 200  Q
     || | | |  ||| ||||||||   |||||||||||| |||| ||||||||||||||||| | |||||||||||||||| |||||||||||||||||||    
T  29423918 agttgttggagcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcgttgatttggtagaaatcagagttgtgtcgaaggattaa 29424017  T
Q  201 ggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggat 300  Q
    ||||||||||| | |||| ||||||||||| ||||||||| | |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||    
T  29424018 ggaacgattgaaggaattatggaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaatcggaggagggat 29424117  T
Q  301 tgtgccggtaacagagagaggattccggtaagtatctccggcggaagatccgccattgga 360  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  29424118 tgtaccggtaacagagagaggattccggtgagtatctccggcggaagatccgtcattgga 29424177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 14550924 - 14551266
Alignment:
Q  1 gggataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgc 100  Q
    |||||||| || ||||||||||||||||||||||| ||||| ||| |  |||||||  | ||| ||||||| |||||||||||||| || ||||| |||     
T  14550924 gggataatgcgatgtttacggatgttagggttccataaagcaatttcgccattggaaaagatgtagagaagaccgttacatgaaccgagcagagagatga 14551023  T
Q  101 ggtagataggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcatcgatttggtagaaatcaaagttgtgtcgaaggattaa 200  Q
     || | |    |||  ||||||||  |||||||||| || ||||||||||||||||||||| | ||||||||||| ||   | |||||||||||||||||    
T  14551024 agttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagagattggacttgtgtcgaaggattaa 14551123  T
Q  201 ggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggat 300  Q
    ||||| ||||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||    
T  14551124 ggaacaattgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggaggagggat 14551222  T
Q  301 tgtgccggtaacagagagaggattccggtaagtatctccggcgg 344  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||    
T  14551223 tgtggcggtaacagagagaggattctggtgagtatctccggcgg 14551266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 140 - 293
Target Start/End: Complemental strand, 8572910 - 8572754
Alignment:
Q  140 cggtggttaggttagagaaat---catcgatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgat 236  Q
    |||||||||| | ||||||||   ||||||||||||||| |||  ||||| |||||| ||||||||||||||||||| |||||| ||||||||| ||| |    
T  8572910 cggtggttagatcagagaaatcatcatcgatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggt 8572811  T
Q  237 gaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggag 293  Q
    |||||| |||||||||||||  |||| ||||||||| || ||||| |||||||||||    
T  8572810 gaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcggag 8572754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 371
Target Start/End: Original strand, 10336621 - 10336785
Alignment:
Q  207 attgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgcc 306  Q
    ||||||| ||||||| |||||||| |||||||| || || |||||||||| ||||| ||||||||| || ||||| ||||||||||| || |||| | ||    
T  10336621 attgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttacc 10336720  T
Q  307 ggtaacagagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaagg 371  Q
    |||||  | |||| |||| |||  || || |||||||||||||||||||||| ||||||||||||    
T  10336721 ggtaaacgggagaagatttcggagagaatttccggcggaagatccgccattgtaaggaaggaagg 10336785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 12005704 - 12005619
Alignment:
Q  1 gggataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacc 86  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| | || ||||||||||||||||| |||||||||||||||||    
T  12005704 gggataatccgatgtttacggatgttagggttccagaaagtgatttcggctttggaggaaatgcagaggaggccgttacatgaacc 12005619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 168 - 311
Target Start/End: Original strand, 10372653 - 10372796
Alignment:
Q  168 ttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagt 267  Q
    |||||||| ||| || ||| || ||||||||||||| ||||||||| |||||||||||||||| |||||||| || |||||||||||||  |||| || |    
T  10372653 ttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaat 10372752  T
Q  268 gatttcgacgttgaacggaatcggaggagggattgtgccggtaa 311  Q
    ||||| || ||||| ||||||||||| || |||| | |||||||    
T  10372753 gattttgaagttgatcggaatcggagaagtgattttaccggtaa 10372796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 12018468 - 12018377
Alignment:
Q  1 gggataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaag 92  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| |    ||||||||||||||||| ||||||||||||||||| |||||    
T  12018468 gggataatccgatgtttacggatgtaagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgagaag 12018377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 11987067 - 11986982
Alignment:
Q  1 gggataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacc 86  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||| |    ||||||||||||||||| |||||||||||||||||    
T  11987067 gggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc 11986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 374
Target Start/End: Complemental strand, 9283512 - 9283343
Alignment:
Q  208 ttgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccg 307  Q
    |||||| || ||| ||||||||| |||||||| || || ||||| ||||||||| |||||||||| || ||||| ||||||||||| || ||||   | |    
T  9283512 ttgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactg 9283413  T
Q  308 gtaa-cagagagaggattccggtaagtatctccggcggaagatc---cgccattggaaggaaggaaggaag 374  Q
    |||| ||| |||| |||| ||| |||||| ||||||||||||||   ||||||||||||||||||||||||    
T  9283412 gtaagcag-gagaagatttcggcaagtatgtccggcggaagatcggacgccattggaaggaaggaaggaag 9283343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 289
Target Start/End: Original strand, 9292699 - 9292820
Alignment:
Q  168 ttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagt 267  Q
    |||||||| ||| || |||||||||||||||||||| || |||||| |||||| ||||||||| ||  ||||| | || |||||||||||||||| ||||    
T  9292699 ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagt 9292798  T
Q  268 gatttcgacgttgaacggaatc 289  Q
    ||||| ||  |||| |||||||    
T  9292799 gattttgaaattgatcggaatc 9292820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 348
Target Start/End: Original strand, 9316770 - 9316976
Alignment:
Q  145 gttaggttagagaaatcatcgatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaatt---ttggaggtgaagtttgatgaagt 241  Q
    ||||||| || ||||||||||||||||||||  ||  | ||||   ||||||||||||| ||||||||| ||||   || ||||||||| ||||||||||    
T  9316770 gttaggtcagggaaatcatcgatttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagt 9316869  T
Q  242 tatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagaggattccggtaagtatctccgg 341  Q
    | || ||||| ||||  |||| ||||||||| || ||||| ||||||||||| || |||| | | |||||  | |||| |||| |||  ||||| |||||    
T  9316870 tgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaagatttcggcgagtatttccgg 9316969  T
Q  342 cggaaga 348  Q
    |||||||    
T  9316970 cggaaga 9316976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 224 - 324
Target Start/End: Complemental strand, 17565436 - 17565336
Alignment:
Q  224 ggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagaggat 323  Q
    ||||||| ||| |||||||||||||||| ||||   ||| |||||||||||||||||| |||| |||||||||||||||| | |||||  ||||||||||    
T  17565436 ggtgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggat 17565337  T
Q  324 t 324  Q
    |    
T  17565336 t 17565336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 9329418 - 9329526
Alignment:
Q  216 attttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacaga 315  Q
    ||||| ||||||||| ||  ||||||| ||||||||||||| ||||| ||||||||| || ||||||||||||||||| || |||| | |||||||  |     
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T
Q  316 gagaggatt 324  Q
    |||||||||    
T  9329518 gagaggatt 9329526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 376
Target Start/End: Original strand, 10353914 - 10354127
Alignment:
Q  166 atttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaa 265  Q
    |||||||||| ||| || |||  |||||| ||||||||  ||||| || |||||  ||||||||| |||||||| || | ||||||||||||||||| ||    
T  10353914 atttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaa 10354013  T
Q  266 gtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagaggattccggtaagtatctccggcggaag---atccgccattggaag 362  Q
     |||||| || ||||| ||||||| ||| || |||  | |||||||  | || |||||| |||| || || ||||| |||||   | ||||||||| |||    
T  10354014 atgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcggtgagaatttccggtggaagttcagccgccattgtaag 10354113  T
Q  363 gaaggaaggaaggt 376  Q
    ||||||| ||||||    
T  10354114 gaaggaatgaaggt 10354127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 12012132 - 12012047
Alignment:
Q  1 gggataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacc 86  Q
    ||||||||| | |||||||||||||||||||||||||| ||| || | |  || |||||||||||||  |||||||||||||||||    
T  12012132 gggataatctgatgtttacggatgttagggttccagaacgcggtttcggtgtttgaggaaatgcagatgaggccgttacatgaacc 12012047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 9060408 - 9060296
Alignment:
Q  236 tgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagaggattccggtaagtat 335  Q
    ||||||| || |||||||||| ||||| ||||||||| || ||||| ||||||||||| || |||||  |||||||  | |||| |||| ||| ||||||    
T  9060408 tgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgggagaagatttcggcaagtat 9060309  T
Q  336 ctccggcggaaga 348  Q
     ||||||||||||    
T  9060308 ttccggcggaaga 9060296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 364
Target Start/End: Complemental strand, 7114965 - 7114824
Alignment:
Q  226 tgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagaggattc 325  Q
    ||||| |||||||| || ||||||||||||| ||||| ||||||||| || ||||| |||||||| || || ||| || | ||||   |||||| ||||     
T  7114965 tgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtaggcgagagaagattt 7114866  T
Q  326 cggtaagtatctccggcggaagat---ccgccattggaagga 364  Q
    |||  ||||| |||||||||||||   |||||||||||||||    
T  7114865 cggatagtatttccggcggaagatcagccgccattggaagga 7114824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 324
Target Start/End: Original strand, 7612716 - 7612823
Alignment:
Q  217 ttttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacagag 316  Q
    |||| ||||||||| ||  ||||||| |||||||| |||| ||||| ||| ||||| ||  |||| |||||||||||||||| |||| |||||||  |||    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  317 agaggatt 324  Q
    ||||||||    
T  7612816 agaggatt 7612823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 12011922 - 12011835
Alignment:
Q  217 ttttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtg 304  Q
    |||| ||||||||| ||| ||||||| || |||||||||| ||||| ||||||||| || ||||| ||||||||||| || |||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtg 12011835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 10348629 - 10348753
Alignment:
Q  223 aggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagagga 322  Q
    |||||||| |||||||| ||  |||||||||||| ||||| ||||||||| || ||||| ||||||||||| || |||| | |||||||  | |||| ||    
T  10348629 aggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 10348728  T
Q  323 ttccggtaagtatctccggcggaag 347  Q
    || |||  || || |||||||||||    
T  10348729 tttcggcgagaatatccggcggaag 10348753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9365199 - 9365242
Alignment:
Q  1 gggataatccggtgtttacggatgttagggttccagaaagcgat 44  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  9365199 gggatgatccgatgtttacggatgttagggttccagaaagcgat 9365242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 8579067 - 8579035
Alignment:
Q  13 tgtttacggatgttagggttccagaaagcgatt 45  Q
    |||||||||||||||||||||||||||||||||    
T  8579067 tgtttacggatgttagggttccagaaagcgatt 8579035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 9275333 - 9275468
Alignment:
Q  207 attgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgcc 306  Q
    ||||||| |||||| ||| ||||| ||||||||||| |||||||| || |  |||| ||||||||| ||  |||| ||||||| ||| || |||||| |     
T  9275333 attgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtact 9275432  T
Q  307 ggtaacagagagaggattccggtaagtatctccggc 342  Q
    |||||| | |||| |||| ||| | |||| ||||||    
T  9275433 ggtaaccgggagaagatttcggcaggtatttccggc 9275468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 8578854 - 8578760
Alignment:
Q  217 ttttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaa 311  Q
    |||| ||||| | ||||| ||||| | |||||||| || | |||| |||||||||| ||  |||| ||||||||||| ||||||||| |||||||    
T  8578854 tttttgaggtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaa 8578760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 117 - 293
Target Start/End: Complemental strand, 41966154 - 41965975
Alignment:
Q  117 gaaaggaatgttgagtttaacgccggtggttaggttagagaaatc---atcgatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgagg 213  Q
    |||||||  |||||||  |||| ||||||||||||||||||||||   |||||  ||||||| ||||  |||| |||||||||||||||| |||||||||    
T  41966154 gaaaggatggttgagtggaacggcggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattgagg 41966055  T
Q  214 aaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggag 293  Q
     | |||  ||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||| ||||| |||||||||||    
T  41966054 gattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggag 41965975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41966300 - 41966263
Alignment:
Q  1 gggataatccggtgtttacggatgttagggttccagaa 38  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  41966300 gggataatccgatgtttacagatgttagggttccagaa 41966263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 311
Target Start/End: Original strand, 5185 - 5373
Alignment:
Q  126 gttgagtttaacgccggtggttaggttagagaaatcatc---gatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttgg 222  Q
    |||||||  |||| ||||||| ||||| |||||||||||   ||||||||||| ||   |  || |||||||||| ||||| | ||||||| |||||| |    
T  5185 gttgagtggaacggcggtggtgaggtttgagaaatcatcttcgatttggtagatattggatctgagtcgaaggatgaaggatctattgagggaatttttg 5284  T
Q  223 aggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaa 311  Q
     ||||||| ||||||||||| || |||||||||| ||||| ||||||||| || ||||| ||||||||||| || |||| | |||||||    
T  5285 cggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtgattttaccggtaa 5373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 376
Target Start/End: Original strand, 26575650 - 26575861
Alignment:
Q  168 ttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagt 267  Q
    |||||||| ||| || |||  ||||||||||||||| |||||| || |||||  ||||||||| |||||||| || | ||||||||||| | ||| ||||    
T  26575650 ttggtagatatcgaatttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaagt 26575749  T
Q  268 gatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagaggattccggtaagtatctccggcggaag---atccgccattggaagga 364  Q
    ||||| || ||||| ||||||||||| || |||  | |||||||  | |||| |||| |||| || || ||||| |||||   | ||||||||| |||||    
T  26575750 gattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttcggtgagaatttccggtggaagttcagccgccattgtaagga 26575849  T
Q  365 aggaaggaaggt 376  Q
    ||||| ||||||    
T  26575850 aggaatgaaggt 26575861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 561789 - 561817
Alignment:
Q  13 tgtttacggatgttagggttccagaaagc 41  Q
    |||||||||||||||||||||||||||||    
T  561789 tgtttacggatgttagggttccagaaagc 561817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 168 - 348
Target Start/End: Original strand, 37463293 - 37463473
Alignment:
Q  168 ttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagt 267  Q
    |||||||| |||  |||||| ||||| ||||| |||  ||||||||  ||||| ||| ||||| ||||||||||| || ||||||||||  |||| ||||    
T  37463293 ttggtagatatcggagttgtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagt 37463392  T
Q  268 gatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagaggattccggtaagtatctccggcggaaga 348  Q
    ||||| || ||||| ||||||||||| || |||| | | |||||  | ||||||||| |||  ||||| ||||||||||||    
T  37463393 gattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaaga 37463473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 36225575 - 36225655
Alignment:
Q  222 gaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattg 302  Q
    ||||||||| ||  ||||||| || ||||||||||  |||| ||||||||| || ||||| ||||||||||||||||||||    
T  36225575 gaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattg 36225655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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