View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11751_low_17 (Length: 387)
Name: NF11751_low_17
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 221 - 367
Target Start/End: Original strand, 50098631 - 50098783
Alignment:
| Q |
221 |
agaaggaggatttgttaactatgctacattacaatttcaat-------aacaaagaaaaaagtgtcgaagacgacaaaagatatctatgggcatggtact |
313 |
Q |
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| T |
50098631 |
agaaggaggatttgttaactatgctacattacaatttcaattataaataacaaagaaaaaagtgtcgaaaacgacaaa-gatatctataggcatggtact |
50098729 |
T |
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| Q |
314 |
catgattttaacaggtacaaattttattcgagtaattttaagtttgatgatttt |
367 |
Q |
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| T |
50098730 |
catgattttaacatatacaaattttattcgagtagttttaagtttgatgatttt |
50098783 |
T |
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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 44752863 - 44752784
Alignment:
| Q |
12 |
agagactagtggaagtaccatacacagcttcacttggacaaacaatgaacacacttgtagcaaacaaggtagtggcggtt |
91 |
Q |
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| T |
44752863 |
agagactagtggaagtaccatacacagcttcacttggacaaacaatgaacacacttgtagcaaacaaggtagtggcggtt |
44752784 |
T |
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