View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11751_low_19 (Length: 346)

Name: NF11751_low_19
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11751_low_19
NF11751_low_19
[»] chr5 (25 HSPs)
chr5 (2-297)||(37400740-37401035)
chr5 (2-299)||(37702669-37702966)
chr5 (5-299)||(37594325-37594619)
chr5 (2-299)||(37711625-37711922)
chr5 (2-258)||(37639914-37640170)
chr5 (2-299)||(37435708-37436005)
chr5 (2-299)||(37392754-37393051)
chr5 (2-252)||(37533148-37533398)
chr5 (2-252)||(37823943-37824193)
chr5 (2-252)||(37696769-37697019)
chr5 (10-264)||(37382205-37382459)
chr5 (7-247)||(37413123-37413363)
chr5 (7-251)||(37428781-37429025)
chr5 (295-346)||(37392701-37392752)
chr5 (295-346)||(37533400-37533451)
chr5 (295-346)||(37711924-37711975)
chr5 (295-346)||(37824195-37824246)
chr5 (295-341)||(37702973-37703019)
chr5 (295-346)||(37400621-37400672)
chr5 (295-346)||(37436007-37436058)
chr5 (295-346)||(37697021-37697072)
chr5 (295-346)||(37697087-37697138)
chr5 (295-340)||(37640178-37640223)
chr5 (295-346)||(37400687-37400738)
chr5 (295-346)||(37594624-37594675)
[»] chr3 (2 HSPs)
chr3 (2-222)||(14553188-14553408)
chr3 (295-346)||(14553410-14553461)
[»] chr4 (2 HSPs)
chr4 (2-299)||(16842738-16843035)
chr4 (9-251)||(24217609-24217851)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 37400740 - 37401035
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37400740 caacctacaaggtcattttccaaattcaatatttgaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 37400839  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||   | |||| ||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  37400840 caattttcaaaattaaacaaactatggtttctccatctttcccataatagttttctttctatcaacattgatagcagtgctgactccatcttacccaacc 37400939  T
Q  202 ttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaatctgaaaagattatatctatccaataacaaaattc 297  Q
    || ||   ||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||    
T  37400940 tttttttattagatttatcctctgctaatattaatagttttcctaaattcccagcacgaaatctgaaaagattatatctctccaataacaacattc 37401035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 299
Target Start/End: Complemental strand, 37702966 - 37702669
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||| |  ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  37702966 caacctacatggtcattttccaaattcaatatatgaactccaaaatcttaccaacttagatttgtcgtcaacaaacttgagtggtgtcgtggattttcac 37702867  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37702866 caattttcaaaattaaaaaaactaaattccctcattctttcacacaatagttttatttctatcaacattgatagcagtgctgactccatcttacccaacc 37702767  T
Q  202 ttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaatctgaaaagattatatctatccaataacaaaattcat 299  Q
    ||||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||| | ||||||    
T  37702766 ttgttgacttagatttctcgtctgctaatattaatagttttcctaaattccaagcacaaaatctgcaaacattagatctctccaataactacattcat 37702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 37594619 - 37594325
Alignment:
Q  5 cctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcaccaa 104  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||  |||||||||||| ||||||||||||||||| ||||||||||||    
T  37594619 cctacatggtcattttccaaattcaatatttcaactccaaaatctatcttacttaactttgtcatcaaccaacttgagtggtgttgtcgattttcaccaa 37594520  T
Q  105 ttttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaaccttg 204  Q
    |||||||||||       ||| | | |||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  37594519 ttttcaaaattaaacaaactagaatatctccatctttcacacaatagttttctttctatcaactttgatagcagtgctgactccatcttacccaaccttg 37594420  T
Q  205 ttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaatctgaaaagattatatctatccaataacaaaattcat 299  Q
    || |||||| |||||||||| ||||||||||||||||||||||||||||| ||| ||||||  |||||||| |||| ||||||||||| ||||||    
T  37594419 ttgacttagttttatcttattctaatattaatagttttcctaaattccaaacacgaaatcttcaaagattagatctctccaataacaacattcat 37594325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 2 - 299
Target Start/End: Complemental strand, 37711922 - 37711625
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37711922 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttacttacttatatttgtcatcaacaaacttgagtggtgttgtggattttcac 37711823  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||   | ||||| |||||||||||||| |||| |||||||||||||||||||||||  | |||||||| |||||||||    
T  37711822 caattttcaaaattaaacaaactatggtatctcgttctttcacacaatacttttctttctatcaacattgatagcagtattgactccatcatacccaacc 37711723  T
Q  202 ttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaatctgaaaagattatatctatccaataacaaaattcat 299  Q
    || ||   ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||| ||||| ||||| ||||||    
T  37711722 ttttttcattagatttatcctctgctaatattaatagttttcctaaattccaagcacgaaatctgcaaacattagatctctccaacaacaacattcat 37711625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 37640170 - 37639914
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37640170 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 37640071  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||| ||| || |||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  37640070 caattttcaaaattaaacaaactaagttcccttgatctttcccataatagttttctttctatcaacattgatagcagtgctgactccatcttacccaacc 37639971  T
Q  202 ttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcac 258  Q
    |||     ||| ||||||||| |||||||||||| |||||||| ||||||| |||||    
T  37639970 ttgaatcattatatttatcttctgctaatattaaaagttttcccaaattcctagcac 37639914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 299
Target Start/End: Complemental strand, 37436005 - 37435708
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||    
T  37436005 caacctagaaggtcatttttcaaattcaatatttcaactccaaaatcttactgaattagatttgtcatcaacaaacttgagtggtgttgtggattttcac 37435906  T
Q  102 caattttcaaaattnnnnnnnctaaattctc-tcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaac 200  Q
    |||||||||||| |       |||| ||||| || ||||||| |||||||||||| |||||||||||| | ||||||||||| |||||||||||||||||    
T  37435905 caattttcaaaacttaaaaatctaa-ttctcctcaatctttcgcacaatagttttctttctatcaacactaatagcagtgctgactccatcttacccaac 37435807  T
Q  201 cttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaatctgaaaagattatatctatccaataacaaaattcat 299  Q
    ||||  |  ||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||  ||| |||| |||| ||||||||||| ||||||    
T  37435806 cttgagatgttagatttatcttctgctaatattaatagttttcctaaattccacgcacaaaaacttcaaacattagatctctccaataacaacattcat 37435708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 2 - 299
Target Start/End: Original strand, 37392754 - 37393051
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||| |  ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  37392754 caacctacatggtcattttccaaattcaatatttgaactccaaaatcttaccaacttagatttgtcttcaacaaacttaagtggtgttgtggattttcac 37392853  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||   | |||| |||||||||||||| ||||| |||||||||||||||||||||||| | || |||||||||| ||||    
T  37392854 caattttcaaaattaaacagactatggtatctctatctttcacacaatggttttctttctatcaacattgatagcagtgttgacaccatcttacctaacc 37392953  T
Q  202 ttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaatctgaaaagattatatctatccaataacaaaattcat 299  Q
    || ||   ||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||| |||| ||||||| ||| ||||||    
T  37392954 ttttttcattagatttatcatatgccaatattaatagttttcctaaattccaagcacgaaatctggaaagcttagatctctccaatagcaacattcat 37393051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37533398 - 37533148
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||| |||||||| |||||||||||||||||||||    
T  37533398 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttaccgacttatatttgtcatccacaaacttaagtggtgttgtggattttcac 37533299  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||  ||| || |||||||| || ||||||||| |||||||||||||| |||||| || | ||||||||||||||||||    
T  37533298 caattttcaaaattaaacaaactaggttcccttgatctttcccataatagttttctttctatcaacattaatagcaatgttgactccatcttacccaacc 37533199  T
Q  202 ttgttaacttagatttatcttatgctaatattaatagttttcctaaattcc 252  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  37533198 ttgttgacttagaattatctaatgctaatattaatagttttcctaaattcc 37533148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37824193 - 37823943
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |  | |||  ||||||||||||||||||||||||||||||||||||||||    
T  37824193 caacctacgaggtcattttccaaattcaatatttcaactccaaaatcttaccgagttaattttgtcatcaacaaacttgagtggtgttgtggattttcac 37824094  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||||||| |||| |||||||||||||| |||| || ||||||||| ||||||||||||| ||||||||||||||||||    
T  37824093 caattttcaaaattaaacaaactaaattccctcgttctttcacacaatacttttcttgctatcaacactgatagcagtgctgactccatcttacccaacc 37823994  T
Q  202 ttgttaacttagatttatcttatgctaatattaatagttttcctaaattcc 252  Q
    || ||   ||||||||||| | |||||||||||||||||||||||||||||    
T  37823993 ttttttcattagatttatcctctgctaatattaatagttttcctaaattcc 37823943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37697019 - 37696769
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |  | ||| ||||||||||||| |||||||||||||||||||||||||||    
T  37697019 caacctacaaggtcattttccaaattcaatatttcaactccaaaaccttaccgagttatatttgtcatcaaccaacttgagtggtgttgtggattttcac 37696920  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||     ||||| |||||||||||||| |||| || ||||||||| ||||||||||||| ||||||||||||||||||    
T  37696919 caattttcaaaattaaaaaaactatggcatctcgttctttcacacaatacttttcttgctatcaacactgatagcagtgctgactccatcttacccaacc 37696820  T
Q  202 ttgttaacttagatttatcttatgctaatattaatagttttcctaaattcc 252  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  37696819 ttgttgacttagaattatctaatgctaatattaatagttttcctaaattcc 37696769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 37382205 - 37382459
Alignment:
Q  10 aaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttc 109  Q
    ||||| |||||||||||||||||| | || | |||||||||  | ||||||  ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  37382205 aaggtgattttccaaattcaatatataaattacaaaatctttttgacttaggattgtcatcaaccaacttgagtggtgttgtggactttcaccaattttc 37382304  T
Q  110 aaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaaccttgttaac 209  Q
    ||| |        |||  ||  || |||||||| |||||||||||  |||||||||| ||||| ||||| | | |||||||||||||||||||||  |      
T  37382305 aaattgtaagaagctatttttccttgatctttcccacaatagtttgctttctatcaatattgaaagcagagttgactccatcttacccaaccttgggata 37382404  T
Q  210 ttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaatc 264  Q
    ||| ||||||||| |  |||||||| ||||||||||||||||  |||||||||||    
T  37382405 ttatatttatcttctagtaatattagtagttttcctaaattcttagcacaaaatc 37382459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 37413123 - 37413363
Alignment:
Q  7 tacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcaccaatt 106  Q
    |||| |||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||  || | |||||| ||||| |||||    
T  37413123 tacatggtcattttccaaattcaatatttaaattccaaaatcttacttacttaggtttgtcatcaacaaacttgaacggcgatgtggactttcatcaatt 37413222  T
Q  107 ttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaaccttgtt 206  Q
    |||||| ||       |||| ||  || |||||||| | ||| | |||| ||||| ||||||||| |||||||| | ||||||||| |||||||||||      
T  37413223 ttcaaattttgaaaaactaactttccttgatctttcccgcaacaattttctttctgtcaacattggtagcagtgttgactccatctcacccaaccttgaa 37413322  T
Q  207 aacttagatttatcttatgctaatattaatagttttcctaa 247  Q
       ||| ||||||||| |  |||||||||||||||||||||    
T  37413323 tcattatatttatcttctagtaatattaatagttttcctaa 37413363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 37429025 - 37428781
Alignment:
Q  7 tacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcaccaatt 106  Q
    |||| |||| ||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||||| ||||| || || ||| || | ||    
T  37429025 tacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaattt 37428926  T
Q  107 ttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaaccttgtt 206  Q
    ||| || ||       || | ||  ||||||||||| |||||||| ||| ||||||||||| |||| || | |  | ||||||||| ||| | ||||  |    
T  37428925 ttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccatctcacctagccttaat 37428826  T
Q  207 aacttagatttatcttatgctaatattaatagttttcctaaattc 251  Q
       ||| ||||||||| | | ||||||||||||||||| ||||||    
T  37428825 gcattatatttatcttctacaaatattaatagttttccaaaattc 37428781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 37392701 - 37392752
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37392701 ttcattgatgagttttcaacttattctttgcaatctttgtatctctcaaata 37392752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 37533451 - 37533400
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  37533451 ttcattggtgagttttcaacatattctttgcaatatttggatctctctaata 37533400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 37711975 - 37711924
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  37711975 ttcattggtgagttctcaacatattctttgcaatctttggatctctctaata 37711924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 37824246 - 37824195
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  37824246 ttcattggtgagttttcaacatattctttgcaatatttggatctctctaata 37824195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 37703019 - 37702973
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctc 341  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  37703019 ttcattggtgagttctcaacatattctttgcaatctttggatctctc 37702973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 37400621 - 37400672
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||| ||||    
T  37400621 ttcattggtgagttctcaacatattctttgcaatatttggatctctctaata 37400672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 37436058 - 37436007
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    |||||||||||||||||||| |||||||| |||||||||  |||||||||||    
T  37436058 ttcattggtgagttttcaacatattcttttcaatctttgactctctcaaata 37436007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 37697072 - 37697021
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||| ||||    
T  37697072 ttcattggtgagttctcaacatattctttgcaatctttgcatctctctaata 37697021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 37697138 - 37697087
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||| ||||    
T  37697138 ttcattggtgagttctcaacatattctttgcaatatttggatctctctaata 37697087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 37640223 - 37640178
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctct 340  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||    
T  37640223 ttcattggtgagttctcaacatattctttgcaatctttgtatctct 37640178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 37400687 - 37400738
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    |||||||||||||||||||| ||||||||||||| ||||  |||||| ||||    
T  37400687 ttcattggtgagttttcaacatattctttgcaatatttgcttctctctaata 37400738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 37594675 - 37594624
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    |||||||||||||||||||| ||||||||||||| ||||  |||||| ||||    
T  37594675 ttcattggtgagttttcaacatattctttgcaatatttgtttctctctaata 37594624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 14553408 - 14553188
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  14553408 caacctacaaggtcattttccaaattcaatatttgaactccaaaatcttaccgacttatatttgtcatccacaaacttgagtggtgttgtggattttcac 14553309  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14553308 caattttcaaaattaaaaaaactaaattccctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 14553209  T
Q  202 ttgttaacttagatttatctt 222  Q
    |||||||||||||||||||||    
T  14553208 ttgttaacttagatttatctt 14553188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 14553461 - 14553410
Alignment:
Q  295 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14553461 ttcattggtgagttttcaacttattctttgcaatctttggatctctcaaata 14553410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 2 - 299
Target Start/End: Original strand, 16842738 - 16843035
Alignment:
Q  2 caacctacaaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcac 101  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| |   | ||||||| ||||||||||||||||||||||||||||||||||||    
T  16842738 caacctacaaggccattttccaaattcaatatttgaactccaaaatcttaccgccctagatttatcatcaacaaacttgagtggtgttgtggattttcac 16842837  T
Q  102 caattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaacc 201  Q
    ||||||||||||||       |||   | |||||||||||||||||||| |||| |||||||||||| |||||||| |||| ||||||||||||||||||    
T  16842838 caattttcaaaattaaacaaactagggtatctcgatctttcacacaatacttttctttctatcaacactgatagcattgctgactccatcttacccaacc 16842937  T
Q  202 ttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaatctgaaaagattatatctatccaataacaaaattcat 299  Q
    || ||   ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  |||||||| |||| ||||||||||| ||||||    
T  16842938 ttttttcattagatttatcttatgctaatattaatagttttcctaaattccaaacacgaaatcttcaaagattagatctctccaataacaacattcat 16843035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 24217609 - 24217851
Alignment:
Q  9 caaggtcattttccaaattcaatatttcaactccaaaatcttgcttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcaccaatttt 108  Q
    |||||| ||||| |||||||||||| | | || ||||||||||||  ||||   ||||||||||  |||||||||||||||||||| |||||||||||||    
T  24217609 caaggtgatttttcaaattcaatatataagcttcaaaatcttgctgccttaagcttgtcatcaaacaacttgagtggtgttgtggactttcaccaatttt 24217708  T
Q  109 caaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgatagcagtgctaactccatcttacccaaccttgttaa 208  Q
    |||| ||       |||  ||| || ||||||||  |||||| | |||||||||| ||| ||| |||| | ||| ||| ||||||||||||||||| | |    
T  24217709 caaattttagaaaactattttcccttgatctttcctacaataatcttatttctattaacgttggtagcggcgctgactacatcttacccaaccttgatga 24217808  T
Q  209 cttagatttatcttatgctaatattaatagttttcctaaattc 251  Q
     |||  |||||||| |  |||| ||||| ||||||||||||||    
T  24217809 tttatctttatcttcttgtaatgttaatggttttcctaaattc 24217851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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