View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11751_low_2 (Length: 862)
Name: NF11751_low_2
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 718; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 16 - 843
Target Start/End: Original strand, 14773751 - 14774570
Alignment:
| Q |
16 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14773751 |
atgaacaaaaactgca-tgtcacatgaggccaaagactccttgttggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
14773849 |
T |
|
| Q |
116 |
ttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaacacacaaaatgaatacatggaattaagactttggtgtgagaaaagg |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14773850 |
ttgttttcctacaaataaaacgatgaatcatgaattggaagaaataaatgccaaaacacaaaatgaatacatggaattaagactttggtgtgagaaaagg |
14773949 |
T |
|
| Q |
216 |
tgaaagaaatgaaatgtctttcactgtcacaataaaaattatcaattaccctagaaatatcaacaacatttacagcataacgatccttattggttggatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14773950 |
tgaaagaaatgaaatgtctttcactgtcacaataaaaattatcaattaccctagaaatatcaacaacatttacagcataacgatccttattggttggatt |
14774049 |
T |
|
| Q |
316 |
gtaagctttggaatatggcctgcattatgaatttcaacaacaataagatgatgctcaataattaaagacgtgttaccaggaatctcaaggtaacaactaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14774050 |
gtaagctttggaatatggcctgcattatgaatttcaacaacaataagatgatgctcaataattaaagacgtgttaccaggaatctcaaggtaacaactaa |
14774149 |
T |
|
| Q |
416 |
aatacctgccaataaagtaattcaacaatgcagattttccagccttaataggtccaaagatgaagcactgcaagacatttctttctgaatgttgtttttt |
515 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14774150 |
aatacctgccaataaagtaattcaataatgcagattttccagccttcataggtccaaagatgaagcactgcaagacatttctttctgaatgttgtttttt |
14774249 |
T |
|
| Q |
516 |
gcgatccacatgtcgcctcctagtcacacagacagcagatgacggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttaga |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14774250 |
gcgatccacatgtcgcctcctagtcacacagatagcagatgacggattaccatgaaaacccatgtataccaagttctccacactaaagattgggtttaga |
14774349 |
T |
|
| Q |
616 |
agtgccatgagtgcccactgttcggaaaacacataatataaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacata |
715 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
14774350 |
agtgtcatgagtgcccactgttcagaaaacacataatataaatcaacggtgatgcaaattaaatcctatatgcattgaaaagatacacagaccagaca-- |
14774447 |
T |
|
| Q |
716 |
tagtcatacatcatgtaaaactaaggcaaatttgatcctcagaatacttttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaa |
815 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
14774448 |
-----atacatcatgtaaaactgaggcaaatttgattctcagaatacttttcaaattgagtgataaaactatgcatagaaggccaccacttttcttcaaa |
14774542 |
T |
|
| Q |
816 |
cattgctcaacaaaatacaaggaagagg |
843 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14774543 |
cattgctcaacaaaatacaaggaagagg |
14774570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 255 - 843
Target Start/End: Original strand, 15016059 - 15016642
Alignment:
| Q |
255 |
tatcaattaccctagaaatatcaacaacatttacagcataacgatccttattggt---tggattgtaagctttggaatatggcctgcattatgaatttca |
351 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| ||||||| | ||| || |||||||||||||| ||||||||||||||| || ||||| | |
|
|
| T |
15016059 |
tatcaattaccgtagaaatatcaacaacattggcagcaaaacgatcttcatttgtagctggattgtaagcttcagaatatggcctgcataattaatttga |
15016158 |
T |
|
| Q |
352 |
acaacaataagatgatgctcaataattaaagacgtgttaccaggaatctcaaggtaacaactaaaatacctgccaataaagtaattcaacaatgcagatt |
451 |
Q |
| |
|
||||||| ||||||||| ||||||||| || |||||||||||| ||||||||||||||||||||||| ||||| | ||||||| |||||||||| |
|
|
| T |
15016159 |
acaacaacaagatgatggtcaataatttaatttgtgttaccaggagcgtcaaggtaacaactaaaataccttccaatgcaacaattcaataatgcagatt |
15016258 |
T |
|
| Q |
452 |
ttccagccttaataggtccaaagatgaagcactgcaagacatttctttctgaatgttgttttttgcgatccacatgtcgcctcctagtcacacagacagc |
551 |
Q |
| |
|
||||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||| |
|
|
| T |
15016259 |
ttccagctttcataggcccaaaaatgaagcactgcaatacatttctttctgaatgttgttttctgcgatccatgtgtcgcctcctagtcacacggatagc |
15016358 |
T |
|
| Q |
552 |
agatgacggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgttcggaaaacacataa |
651 |
Q |
| |
|
|||||| |||||||||||| |||| ||||| | || |||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
15016359 |
agatgatggatcaccaggataaccaatgtacatcagattctccacactaaaggtcgggtttagaagtgtcatgagtgcccactgtttggaaaacatataa |
15016458 |
T |
|
| Q |
652 |
tat--aaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaatttg |
749 |
Q |
| |
|
||| |||||| | ||||||||||| |||| |||||| || ||||||||||||||||||||| || ||||||||||||||||||||| |||||| || |
|
|
| T |
15016459 |
tataaaaatcagcggtgatgcaaataaaatactatatgcagggaaaagatacacagaccagacgtacagtcatacatcatgtaaaactgaggcaaccatg |
15016558 |
T |
|
| Q |
750 |
atcctcagaatacttttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaaatacaaggaagagg |
843 |
Q |
| |
|
|| |||| |||||||||||||| ||||||||| ||| ||||||| ||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
15016559 |
attctcaaaatacttttcaaatatagtgataaa--tat--------tcccaccatttttctataaacattgttcaacaaaatataaggaagagg |
15016642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 255 - 843
Target Start/End: Original strand, 17881278 - 17881873
Alignment:
| Q |
255 |
tatcaattaccctagaaatatcaacaacatttacagcataacgatccttattggttggattgtaagctttggaatatggcctgcattatgaatttcaaca |
354 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| ||| | |
|
|
| T |
17881278 |
tatcatttaccatagaaatatcaacaacatttacagcatagcgatcctcgttggttggattgtaagcttcagaatatgacctgcatcatgaatt-caata |
17881376 |
T |
|
| Q |
355 |
acaataagatgatgctcaataattaaagacgtgtt-accaggaatctc-aaggtaacaactaaaatacctgccaataaagtaattcaacaatgcagattt |
452 |
Q |
| |
|
| |||||||||||||||||||||| ||| ||||| || |||||| ||||||||||| ||||||||| |||| || ||||||| ||||||||||| |
|
|
| T |
17881377 |
agaataagatgatgctcaataattgaagcggtgtttactcagaatctttaaggtaacaaccaaaataccttccaacgaaagaattcaataatgcagattt |
17881476 |
T |
|
| Q |
453 |
tccagccttaataggtccaaagatgaagcactgcaagacatttctttctgaatgttgttttttgcgatccacatgtcgcctcctagtcacacagacagca |
552 |
Q |
| |
|
||| ||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| | |||| |||||||||||| || ||| |
|
|
| T |
17881477 |
tccggccttcctaggcccaaaaatgaagcactgcaatacatttctttctgaatgttgtttttggcgatccatgtttcgcatcctagtcacacggatcgca |
17881576 |
T |
|
| Q |
553 |
gatgacggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgttcggaaaacacata-- |
650 |
Q |
| |
|
||||| |||||||||||| |||| ||| ||| || ||||||||||||||| |||| |||||||||| |||||||||||||||| | |||||| ||| |
|
|
| T |
17881577 |
gatgatggatcaccaggataaccaatgcatatcaggttctccacactaaaggttggatttagaagtgtcatgagtgcccactgtccaaaaaacatatatg |
17881676 |
T |
|
| Q |
651 |
--atataaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaattt |
748 |
Q |
| |
|
||| || |||| || |||||| ||||||||| || | || ||| || |||||||||||| || ||||||||||||||||||||| || || || |
|
|
| T |
17881677 |
ttataaaattcaatggtaatgcaagttaaatgctgcatgtactg-aaatatgcacagaccagacgtacagtcatacatcatgtaaaactgagataacctt |
17881775 |
T |
|
| Q |
749 |
gatcctcagaatacttttcaaattgagtgataaaac---tatccatagaagcccaccacttttctacaaacattgctcaacaaaatacaaggaagagg |
843 |
Q |
| |
|
||| | || | |||| |||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
17881776 |
gattcccaaagaacttatcaaattgagtgatcaaactattattcatagaagcccaccactcttctacaaacattgttcaacaaaatataaggaagagg |
17881873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 17881020 - 17881248
Alignment:
| Q |
19 |
aacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttg |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
17881020 |
aacaaaaaccgcaatgtcacatgaggccaaagactccttattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttg |
17881119 |
T |
|
| Q |
119 |
ttttcctacaaataaaacgataaatcatgaattggaagaaataaatgcca-acacacaaaatgaatacatggaattaagactttggtgtgagaaaaggtg |
217 |
Q |
| |
|
|||||||||||| |||| ||| || | |||||||||||| ||| | | | | | ||||||||||||||| ||| |||||||||||| ||||||| | |
|
|
| T |
17881120 |
ttttcctacaaacaaaatgattaaccgtgaattggaagatgtaattccaatatatacaaaatgaatacatcaaatgaagactttggtgcaggaaaaggcg |
17881219 |
T |
|
| Q |
218 |
aaagaaatgaaatgtctttcactgtcaca |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
17881220 |
aaagaaatgaaatgtctttctctgtcaca |
17881248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 255 - 636
Target Start/End: Original strand, 15048513 - 15048890
Alignment:
| Q |
255 |
tatcaattaccctagaaatatcaacaacatttacagcataacgatccttattggttggattgtaagctttggaatatggcctgcattatgaatttcaaca |
354 |
Q |
| |
|
||||| |||||||||||||||| || | |||||||||| ||||||||| |||||| ||||||||||| |||||||| ||||| |||||||| |||| |
|
|
| T |
15048513 |
tatcatttaccctagaaatatcgacgatatttacagcaaaacgatcctcgttggtttcattgtaagcttcagaatatggtctgcaatatgaatt-caacg |
15048611 |
T |
|
| Q |
355 |
acaataagatgatgctcaataattaaagacgtgttaccaggaatct-caaggtaacaactaaaatacctgccaataaagtaattcaacaatgcagatttt |
453 |
Q |
| |
|
||| || ||||||| ||||||||| | |||||||| |||||| || ||||||||||||||||||| ||||| || |||||||||| ||||||||| |
|
|
| T |
15048612 |
acagta---tgatgctaaataattaatgttttgttaccaagaatcttcatggtaacaactaaaataccttccaatgaatgaattcaacaacgcagatttt |
15048708 |
T |
|
| Q |
454 |
ccagccttaataggtccaaagatgaagcactgcaagacatttctttctgaatgttgttttttgcgatccacatgtcgcctcctagtcacacagacagcag |
553 |
Q |
| |
|
|| ||||| ||| ||||| | ||| | |||||| ||||||||||| ||||||||||||||| ||||| |||| ||||||||||||| || ||||| |
|
|
| T |
15048709 |
ccggccttccgaggcccaaaaacgaaaccctgcaacacatttctttccgaatgttgttttttgtaatccatgtgtctcctcctagtcacatggatagcag |
15048808 |
T |
|
| Q |
554 |
atgacggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgt |
636 |
Q |
| |
|
| || |||||||| || |||| |||| || | | |||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
15048809 |
acgatggatcacc-gggtaaccaatgtttataaggctctccacactaagggttgggtttagaagtgtcatgagtgcccactgt |
15048890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 15015513 - 15015727
Alignment:
| Q |
16 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||| | || ||||||| ||| ||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
15015513 |
atgaacaaaaactgcaatgtcacatgagcccagagactccttgtttgctagcagctttgtaactccaccttcagaaatctctctcagcacaatatatttt |
15015612 |
T |
|
| Q |
116 |
ttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaaca--cacaaaatgaatacatggaattaagactttggtgtgagaaaa |
213 |
Q |
| |
|
||||||||||||||| |||| | |||| ||||||||||||| |||| | ||| | ||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
15015613 |
ttgttttcctacaaacaaaatggtaaacaatgaattggaagatataagtatcaatatgtacaaaatgaatacatcaaatgaagactttggtgtgagaaaa |
15015712 |
T |
|
| Q |
214 |
ggtgaaagaaatgaa |
228 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
15015713 |
gttgaaagaactgaa |
15015727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 15048253 - 15048403
Alignment:
| Q |
19 |
aacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| | ||||||||||||||||| |||||||||||||||| |
|
|
| T |
15048253 |
aacaaaaattgcaatgtcacatgaggccaaagacttcttattggctagcagctttgtgactcctccttcagaaatctctctcagcacaagatattttttg |
15048352 |
T |
|
| Q |
119 |
ttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaa |
169 |
Q |
| |
|
|||||||||||| |||| ||| || | |||| ||||||| ||||||||||| |
|
|
| T |
15048353 |
ttttcctacaaacaaaatgattaaccgtgaactggaagatataaatgccaa |
15048403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 764 - 841
Target Start/End: Original strand, 15049336 - 15049413
Alignment:
| Q |
764 |
tttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaaatacaaggaaga |
841 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
15049336 |
tttcaaattgagtgataaaactatccatagaagcccaccacttttctacttgcatttttcaacaaaatattaggaaga |
15049413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 714
Target Start/End: Original strand, 15049255 - 15049314
Alignment:
| Q |
655 |
aaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacat |
714 |
Q |
| |
|
||||||| ||||||||||| ||||| || | ||| |||||||||||||||||||||||| |
|
|
| T |
15049255 |
aaatcaattgtgatgcaaatgaaatgatacacacactgaaaagatacacagaccagacat |
15049314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 5e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 261 - 829
Target Start/End: Complemental strand, 36876283 - 36875706
Alignment:
| Q |
261 |
ttaccctagaaatatcaacaacatttacagcataacgatccttattggttggattgtaagctttggaatatggcctgcattatgaatttcaacaacaata |
360 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36876283 |
ttaccctggatatatcaacaacatttacagcataacgatcctcgttggttggattataagcttcagaatatggcctgcattatgaatt-caacaacaata |
36876185 |
T |
|
| Q |
361 |
aga--tgatgctcaataattaaagacgtgttaccaggaatctca-aggtaacaactaaaatacctgccaataaagtaattcaacaatgcagattttccag |
457 |
Q |
| |
|
||| |||||| ||||| |||| | ||||||||| ||| | |||||||||| ||||||||| ||||| || ||||||| | ||| |||||||| | |
|
|
| T |
36876184 |
agacatgatgccaaataagtaaatctatattaccaggactcttataggtaacaacgaaaataccttccaatgaaagaattcaatattgcggattttccgg |
36876085 |
T |
|
| Q |
458 |
ccttaataggtccaaagatgaagcactgcaagacatttctttctgaatgttgttttttgcgatccacatgtcgcctcctagtcacacagacagcagatga |
557 |
Q |
| |
|
||| |||| ||||| | |||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |||||||||| | |
|
|
| T |
36876084 |
actttctaggcccaaaaacgaagcactgcaatacatttctttctgaatgttgttttttacgatctacgcgtcgcttcctagtcacacggacagcagataa |
36875985 |
T |
|
| Q |
558 |
cggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagtgcccactgttcggaaaacacataat----- |
652 |
Q |
| |
|
|| |||||||| || || ||||||| || ||||||| ||| || ||||||||||||| ||||||||||||||| | ||||||| ||||| |
|
|
| T |
36875984 |
tggttcaccagggaaccctatgtatatcagattctccaaactgaaggacgggtttagaagtgtcatgagtgcccactgcccagaaaacatataatttctc |
36875885 |
T |
|
| Q |
653 |
----ataaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaattt |
748 |
Q |
| |
|
| | || || |||||||||| |||||| ||||| |||||||||||||||||||||| ||||| | ||||| ||||||||||||| | |||| || |
|
|
| T |
36875884 |
tttaaaatattaattgtgatgcaaa-taaatgttatatgcattgaaaagatacacagaccatacatacaatcatatatcatgtaaaactgaagcaatctt |
36875786 |
T |
|
| Q |
749 |
gatcctcagaatacttttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaa |
829 |
Q |
| |
|
||| |||| || ||| || |||| ||||||||||||| ||||||||| | ||| ||| |||||| ||||||| |||||||| |
|
|
| T |
36875785 |
gattctca-aacactatttaaatagagtgataaaactttccatagaaactcacaactcttctacgaacattgttcaacaaa |
36875706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 655 - 830
Target Start/End: Complemental strand, 36875384 - 36875211
Alignment:
| Q |
655 |
aaatcaacagtgatgcaaattaaatgctatatacattgaaaagatacacagaccagacatatagtcatacatcatgtaaaactaaggcaaatttgatcct |
754 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||| |||||| |||| || |
|
|
| T |
36875384 |
aaatcaacagcgatgcaaat-aaatgttatatgcattgaaaagatacacagacaagacatacagtcatacatcatgcaaaactgaggcaaccgtgattct |
36875286 |
T |
|
| Q |
755 |
cagaatacttttcaaattgagtgataaaactatccatagaagcccaccacttttctacaaacattgctcaacaaaa |
830 |
Q |
| |
|
|| || ||| | ||||||||| |||| ||| | ||||||||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
36875285 |
ca-aacactaattaaattgagtaataagactttacatagaagcccgccactcttctatgaacattgttcaacaaaa |
36875211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 36876577 - 36876445
Alignment:
| Q |
20 |
acaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| ||| | ||||||| ||||||| ||||||||| ||| |
|
|
| T |
36876577 |
acaaaaactgcaatgtcacatgaggccaaagactccttgtcggccaccagtcttgcaacttcaccttctggaatctctttcaacacgagatattttctgt |
36876478 |
T |
|
| Q |
120 |
tttcctacaaataaaacgat-aaatcatgaatt |
151 |
Q |
| |
|
|||||| |||| ||||| || |||||||||||| |
|
|
| T |
36876477 |
tttcctgcaaacaaaacaataaaatcatgaatt |
36876445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 768 - 818
Target Start/End: Complemental strand, 36875632 - 36875582
Alignment:
| Q |
768 |
aaattgagtgataaaactatccatagaagcccaccacttttctacaaacat |
818 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| || ||| ||||| |
|
|
| T |
36875632 |
aaattgagtgagaaaaccatccatagaagcccaccactcttatacgaacat |
36875582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 54158964 - 54159114
Alignment:
| Q |
16 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
115 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||| | ||||||||| || | |||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
54158964 |
atgaacaataattgcaatgtcacaagaggccaaagactccttattcgccagcagccctttaactccatcttcaggaatctctctcagcacaagatatttc |
54159063 |
T |
|
| Q |
116 |
ttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgc |
166 |
Q |
| |
|
|| ||| ||| |||| |||| |||||| ||| ||| ||||||| |||||| |
|
|
| T |
54159064 |
ttctttccctgcaaacaaaatgataaaacataaatatgaagaaagaaatgc |
54159114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 53868346 - 53868220
Alignment:
| Q |
16 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
115 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||| || | |||||||||||| | |||||| ||||| ||| ||||||| |||||||||||| |
|
|
| T |
53868346 |
atgaacgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatatttc |
53868247 |
T |
|
| Q |
116 |
ttgttttcctacaaataaaacgataaa |
142 |
Q |
| |
|
|||||| ||| |||| |||| |||||| |
|
|
| T |
53868246 |
ttgtttccctgcaaacaaaatgataaa |
53868220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 255 - 364
Target Start/End: Original strand, 54159170 - 54159278
Alignment:
| Q |
255 |
tatcaattaccctagaaatatcaacaacatttacagcataacgatccttattggttggattgtaagctttggaatatggcctgcattatgaatttcaaca |
354 |
Q |
| |
|
||||| ||||| ||||| |||||| ||||| ||||||||| |||||| ||||||||||||||| || |||||||||||||| |||||| ||||||| |
|
|
| T |
54159170 |
tatcatttaccatagaatcatcaaccacattcacagcataatgatcctcgttggttggattgtaaatttcagaatatggcctgcaatatgaa-ttcaaca |
54159268 |
T |
|
| Q |
355 |
acaataagat |
364 |
Q |
| |
|
|||||||||| |
|
|
| T |
54159269 |
acaataagat |
54159278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 51365876 - 51366025
Alignment:
| Q |
16 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctct-gtgactccacattcagaaatctctctcaacacaagatattt |
114 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| | |||||||| ||| |||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
51365876 |
atgaacaaaaatggcaatgtcacaagaggccaaagactccttattagccagcagttctcttgactccatcttcatgaatctctttcaacacaagatattt |
51365975 |
T |
|
| Q |
115 |
tttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgc |
166 |
Q |
| |
|
|||||| ||| ||| | || |||||| |||||| | ||||||| |||||| |
|
|
| T |
51365976 |
cttgtttccctgcaact--aatgataaaacatgaacttgaagaaagaaatgc |
51366025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 255 - 362
Target Start/End: Complemental strand, 53868141 - 53868035
Alignment:
| Q |
255 |
tatcaattaccctagaaatatcaacaacatttacagcataacgatccttattggttggattgtaagctttggaatatggcctgcattatgaatttcaaca |
354 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||| |||||||||||| || ||||||| ||| || |||||||||||||||||||||| |||| |
|
|
| T |
53868141 |
tatcatttaccatagaattatcaacaacatttacaacataacgatcctcgttagttggatcataaatttcaagatatggcctgcattatgaattt-aaca |
53868043 |
T |
|
| Q |
355 |
acaataag |
362 |
Q |
| |
|
|||||||| |
|
|
| T |
53868042 |
acaataag |
53868035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 51366131 - 51366189
Alignment:
| Q |
255 |
tatcaattaccctagaaatatcaacaacatttacagcataacgatccttattggttgga |
313 |
Q |
| |
|
||||| ||||| ||| || ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51366131 |
tatcatttaccatagcaaaatcaacaacatttacagcataacgatcctcgttggttgga |
51366189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 528 - 636
Target Start/End: Original strand, 54159457 - 54159565
Alignment:
| Q |
528 |
tcgcctcctagtcacacagacagcagatgacggatcaccaggaaaacccatgtataccaagttctccacactaaatattgggtttagaagtgccatgagt |
627 |
Q |
| |
|
||||||||||||||| | || ||||||||| ||||| |||| |||| ||||| | || |||| ||||||||| |||||| || ||||| ||||||| |
|
|
| T |
54159457 |
tcgcctcctagtcacgcggatagcagatgatggatcgccagtgtaaccaatgtaaagcagattcttcacactaaaagttgggtctataagtgtcatgagt |
54159556 |
T |
|
| Q |
628 |
gcccactgt |
636 |
Q |
| |
|
||||||||| |
|
|
| T |
54159557 |
gcccactgt |
54159565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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