View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11751_low_20 (Length: 319)
Name: NF11751_low_20
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 44699895 - 44699598
Alignment:
| Q |
1 |
tgaattcttaaagtgtttagtttgttgcttcttcttctgccacaaaggatgtaatgagaaactttcatgaaggaaaaatcattatgatgataacaaataa |
100 |
Q |
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| T |
44699895 |
tgaattcttaaagtgtttagtttgttgcttcttcttctgccacaaaggatgtaatgagaaactttcatgaaggaaaaataattatgatgataacaaataa |
44699796 |
T |
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| Q |
101 |
aagggaaaggcagtgcaacatatggagcctactaaaaaatcacgaaagagaaacttccgtaaagagatttgcaactcctacgagaagtatggccataagg |
200 |
Q |
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| T |
44699795 |
aagggaaaggcagtgcaacatatggagcctactaaaaaatcacgaaagagaaactgccgtaaagagatttgcaactcctacgagaagtatggc---aagg |
44699699 |
T |
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| Q |
201 |
tggatgacggctatttcctaaaaagaaaaatttagaagcaatgcactctagtttgttttgaatctaatattgtatatttaccttctgatacttggtggtt |
300 |
Q |
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| T |
44699698 |
tggatgatggctatttcctaaaaagaaaaatttagaagcaatgcactctagtttgttttgaatctaatattgtatatttaccttctgatacttggtggtt |
44699599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 44699250 - 44699547
Alignment:
| Q |
12 |
agtgtttagtttgttgcttcttcttctgccacaaaggatgtaatgagaaactttcatgaaggaaaa-atcattatgatgataacaaataaaagggaaagg |
110 |
Q |
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|||||| | ||||||||| |||||||| |||||||||||| | ||||||||||||| |||||||| || ||| | ||||||| ||| | |||||||| |
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| T |
44699250 |
agtgttcattttgttgctgcttcttctagcacaaaggatgtcaagagaaactttcataaaggaaaatattattctaatgataagaaa---aggggaaagg |
44699346 |
T |
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| Q |
111 |
cagtgcaacatatggagcctactaaaaaatcacgaaagagaaacttccgtaaagagatttgcaactcctacgagaagtatggccataaggtggatgacgg |
210 |
Q |
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| T |
44699347 |
cagtgcaacatatgaagcttaaaaagaaaacatataagggaaacttccataaagatatttgcaagtaatgcactaagtatggctataaggtggttgactg |
44699446 |
T |
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| Q |
211 |
ctatttcctaaaaagaaaaattt-agaagcaatgcac---------tctagtttgttttgaatctaatattgtatatttaccttctgatacttggtggtt |
300 |
Q |
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||||||||| | ||| ||| || ||||||||||||| ||||| |||||||||||||||||| ||| || |||||||||||||||||||||| |
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| T |
44699447 |
ctatttccttacaagggaaacttgagaagcaatgcacactcttagctctagcttgttttgaatctaatatagtagatgtaccttctgatacttggtggtt |
44699546 |
T |
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