View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11751_low_22 (Length: 311)

Name: NF11751_low_22

Description: NF11751

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11751_low_22

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 118; E-Value: 3e-60

Query Start/End: Original strand, 113 - 290

Target Start/End: Original strand, 34667089 - 34667265

Alignment:

Q	113	agagaagttcattttggttaatttccaattgaaacagatccagnnnnnnnnnnnnnnnnncacctgaatccagaaaacaataaaagccttatgaacagag	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34667089	agagaagttcattttggttaatttccaattgaaacagatccagaaaagaaaaaaaaaaa-cacctgaatccagaaaacaataaaaaccttatgaacagag	34667187	T

Q	213	tcacccattgaaacagttgaatcattaagtgcagatttgttattaattttttatttatttgaaaaactatgaatcatt	290	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34667188	tcacccattgaaacagttgaatcattaagtgcagatttgttattaattttttatttatttgaaaaactatgaatcatt	34667265	T

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Target: chr8; HSP #2

Raw Score: 44; E-Value: 5e-16

Query Start/End: Original strand, 252 - 295

Target Start/End: Original strand, 34667296 - 34667339

Alignment:

Q	252	ttattaattttttatttatttgaaaaactatgaatcattaagtg	295	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34667296	ttattaattttttatttatttgaaaaactatgaatcattaagtg	34667339	T

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