View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11751_low_23 (Length: 288)
Name: NF11751_low_23
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11751_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 36247574 - 36247325
Alignment:
| Q |
20 |
atcagatatacaaacagtaacatagtaataacagaaactctaaaattcaataatttgaaaatgatgaagactatcatatactccgtacctcctaatacaa |
119 |
Q |
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| T |
36247574 |
atcagatatacaaacagtaacatagtaataatagaaactctaaaatttaatcatttgaaaatgatgaagactttcatatactccgtacctcctaatacaa |
36247475 |
T |
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| Q |
120 |
ccaaggcctcaagaaaccaaagtcaaagtatcaaatactgataaagttttagaaaaatgttacatgtatcaatatcaatcattaattaactagctacata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
36247474 |
ccaaggcctcaagaaaccaaagtcaaagtatcaaatactgataaagttttagaaaaatgttacatgtatcaacatcaatcattaattaactagctac--a |
36247377 |
T |
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| Q |
220 |
taaatcaatgcgagtaattaaataataaaacttttgtttaatccaaattatt |
271 |
Q |
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| T |
36247376 |
taaatcaatgcgagtaattaaataataaaacttttgtttaatccaaattatt |
36247325 |
T |
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