View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11751_low_25 (Length: 265)

Name: NF11751_low_25
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11751_low_25
NF11751_low_25
[»] chr8 (2 HSPs)
chr8 (18-222)||(27228537-27228741)
chr8 (18-257)||(27224334-27224573)
[»] chr1 (9 HSPs)
chr1 (18-208)||(48617781-48617971)
chr1 (18-206)||(11547595-11547783)
chr1 (18-237)||(48653484-48653703)
chr1 (18-222)||(48640264-48640468)
chr1 (18-222)||(48585691-48585895)
chr1 (104-220)||(48661984-48662100)
chr1 (107-220)||(48667576-48667689)
chr1 (84-222)||(48656998-48657136)
chr1 (104-206)||(48629288-48629390)
[»] chr3 (1 HSPs)
chr3 (18-220)||(19665125-19665327)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 27228537 - 27228741
Alignment:
Q  18 aaaccatcgtcaaagaactcgaatgtgagagaaccattaccaactggaatgactgatttatcaataatgttgttaacagttctcaagtctttgccagctt 117  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||    
T  27228537 aaaccgtcttcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaacagttctcaactctctgccagctt 27228636  T
Q  118 tctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggatatgatacaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228637 tctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggatatgatacaag 27228736  T
Q  218 gagaa 222  Q
    |||||    
T  27228737 gagaa 27228741  T

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Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 27224334 - 27224573
Alignment:
Q  18 aaaccatcgtcaaagaactcgaatgtgagagaaccattaccaactggaatgactgatttatcaataatgttgttaacagttctcaagtctttgccagctt 117  Q
    ||||| || ||||||||||  ||||||||||||||||||||||||||||||||| |||| ||| | || ||||||||||||||||| |||||||||||||    
T  27224334 aaaccgtcatcaaagaactgaaatgtgagagaaccattaccaactggaatgactaatttttcagtgatattgttaacagttctcaattctttgccagctt 27224433  T
Q  118 tctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggatatgatacaag 217  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27224434 tctctgttgtgatgaagataacagaagaaccctttgatgcaagacactttcctagtctaagcataggatttatgtgtccttgtgctggatatgatacaag 27224533  T
Q  218 gagaacgttaaggggagctttggtagattccattttcatt 257  Q
    |||||  |||||||||||||||||| ||||||||||||||    
T  27224534 gagaattttaaggggagctttggtatattccattttcatt 27224573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 48617971 - 48617781
Alignment:
Q  18 aaaccatcgtcaaagaactcgaatgtgagagaaccattaccaactggaatgactgatttatcaataatgttgttaacagttctcaagtctttgccagctt 117  Q
    |||||||| || |||||||| || || |||||||||| ||||| || | ||| |||||| ||||| || |||||||||||||| | ||||||||||||||    
T  48617971 aaaccatcatctaagaactcaaaagtaagagaaccatcaccaattgaagtgagtgatttttcaatgatattgttaacagttcttatgtctttgccagctt 48617872  T
Q  118 tctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggata 208  Q
    |||| |||||||||||||| ||||||| ||||||||  |||||||||||| ||| |||||| | ||| |||||||||||||||||||||||    
T  48617871 tctctgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgtccttgtgctggata 48617781  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 11547595 - 11547783
Alignment:
Q  18 aaaccatcgtcaaagaactcgaatgtgagagaaccattaccaactggaatgactgatttatcaataatgttgttaacagttctcaagtctttgccagctt 117  Q
    |||||||| ||||||||||| || ||||||||||||||||| | ||   |||||||||| ||||  ||||||||||| |||   | ||||||||||||||    
T  11547595 aaaccatcatcaaagaactcaaaagtgagagaaccattacctattgatgtgactgatttttcaacgatgttgttaaccgtttgtatgtctttgccagctt 11547694  T
Q  118 tctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctgga 206  Q
    |||  |||||||||||||| ||||||| ||||||||  |||||||||||| |||||||||| | ||| ||||||||||||||| |||||    
T  11547695 tctttgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctaatctaagaagagggtttatgtgtccttgtcctgga 11547783  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 48653484 - 48653703
Alignment:
Q  18 aaaccatcgtcaaagaactcgaatgtgagagaaccattaccaactggaatgactgatttatcaataatgttgttaacagttctcaagtctttgccagctt 117  Q
    |||| ||| ||||||||||| || ||||| ||||||| ||||| |||| ||| |||||| ||||| ||||||||||||||||| | |||||| ||||||     
T  48653484 aaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagctc 48653583  T
Q  118 tctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggatatgatacaag 217  Q
    | || ||||||||||| || ||||||| ||||||||  |||| ||||||| |||  ||||||| |||||| |||||||||||||||||||| || | |||    
T  48653584 tttctgttgtgatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtccttgtgctggataagaaataag 48653683  T
Q  218 gagaacgttaaggggagctt 237  Q
    ||| || | || ||||||||    
T  48653684 gaggacatgaatgggagctt 48653703  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 48640264 - 48640468
Alignment:
Q  18 aaaccatcgtcaaagaactcgaatgtgagagaaccattaccaactggaatgactgatttatcaataatgttgttaacagttctcaagtctttgccagctt 117  Q
    ||||||||||||||||||||||| | || || ||||| ||||| |||| |  || |||| ||||| ||||||||| ||| || || || |||||||||      
T  48640264 aaaccatcgtcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccg 48640363  T
Q  118 tctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggatatgatacaag 217  Q
    |||| |||||| ||||||||||||  | ||||||||  |||||| ||||||||| || ||  | | | ||||||||||||||||||||| | || |||||    
T  48640364 tctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaag 48640463  T
Q  218 gagaa 222  Q
    |||||    
T  48640464 gagaa 48640468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 48585691 - 48585895
Alignment:
Q  18 aaaccatcgtcaaagaactcgaatgtgagagaaccattaccaactggaatgactgatttatcaataatgttgttaacagttctcaagtctttgccagctt 117  Q
    |||||||| |||||||||||||| | || || ||||| ||||| |||| |  || |||| ||||| ||||||||| ||| || || || |||||||||      
T  48585691 aaaccatcatcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccg 48585790  T
Q  118 tctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggatatgatacaag 217  Q
    |||| |||||| ||||||||||||  | ||||||||  |||||| ||||||||| || ||  | | | ||||||||||||||||||||| | || |||||    
T  48585791 tctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaag 48585890  T
Q  218 gagaa 222  Q
    |||||    
T  48585891 gagaa 48585895  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 48661984 - 48662100
Alignment:
Q  104 gtctttgccagctttctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgct 203  Q
    |||||||||||||||||| |||||| |||| || ||||| | ||| ||||  |||||||||||||||| |||||| | ||| ||||||||||||||||||    
T  48661984 gtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgct 48662083  T
Q  204 ggatatgatacaaggag 220  Q
    ||| | || ||||||||    
T  48662084 ggaaaagaaacaaggag 48662100  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 48667576 - 48667689
Alignment:
Q  107 tttgccagctttctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctgga 206  Q
    ||||||| |||| || |||||||||||||| ||||||| ||||||||  |||||||| || |||| |||||| | ||| |||||||||||||||||||||    
T  48667576 tttgccacctttttctgttgtgatgaagatgacagaagcaccctttgcagcaagacatttacctagtctaagaagagggtttatgtgtccttgtgctgga 48667675  T
Q  207 tatgatacaaggag 220  Q
     | || ||||||||    
T  48667676 aaagaaacaaggag 48667689  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 48656998 - 48657136
Alignment:
Q  84 atgttgttaacagttctcaagtctttgccagctttctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcatag 183  Q
    ||||||||| |||||  || |||||||||||||||||  |||||| ||||||| ||||||||||||||||  ||||||||||| |||| | |||| | ||    
T  48656998 atgttgttagcagtttccatgtctttgccagctttctgcgttgtggtgaagatgacagaagaaccctttgcagcaagacacttccctagtttaagaagag 48657097  T
Q  184 gatttatgtgtccttgtgctggatatgatacaaggagaa 222  Q
      ||||| ||||| | ||  ||||| |||||||||||||    
T  48657098 agtttatatgtccgtatgaaggataagatacaaggagaa 48657136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 48629288 - 48629390
Alignment:
Q  104 gtctttgccagctttctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgct 203  Q
    ||||||||| |||||||| |||||  | ||||| ||||| | ||||||||  |||||||| ||||||| |||||| | ||| ||||||||||||||||||    
T  48629288 gtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttgtgct 48629387  T
Q  204 gga 206  Q
    |||    
T  48629388 gga 48629390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 19665327 - 19665125
Alignment:
Q  18 aaaccatcgtcaaagaactcgaatgtgagagaaccattaccaactggaatgactgatttatcaataatgttgttaacagttctcaagtctttgccagctt 117  Q
    |||||||| |||||||| | |||  |||||||||||| ||| | |||| ||| |||||| | | | |||||||||||||||  || ||||||||||||||    
T  19665327 aaaccatcatcaaagaagtggaaaatgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagctt 19665228  T
Q  118 tctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggatatgatacaag 217  Q
    |||| || ||||||||||| || |||||||||||||  |||||||||||| ||| |||||| | ||| |||||||||||||||||||||||||| | |||    
T  19665227 tctctgtagtgatgaagatgactgaagaaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgtccttgtgctggatatgagataag 19665128  T
Q  218 gag 220  Q
    |||    
T  19665127 gag 19665125  T

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