View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11751_low_29 (Length: 252)

Name: NF11751_low_29
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11751_low_29
NF11751_low_29
[»] chr1 (12 HSPs)
chr1 (1-228)||(51756593-51756821)
chr1 (11-223)||(51854932-51855151)
chr1 (12-204)||(51762780-51762979)
chr1 (9-228)||(51858586-51858812)
chr1 (146-217)||(51782790-51782861)
chr1 (144-202)||(51407546-51407604)
chr1 (134-219)||(51832362-51832447)
chr1 (12-66)||(51221064-51221118)
chr1 (146-220)||(51381444-51381518)
chr1 (9-111)||(51381300-51381403)
chr1 (134-223)||(51221193-51221282)
chr1 (158-219)||(51829766-51829827)
[»] chr6 (5 HSPs)
chr6 (9-223)||(4182846-4183067)
chr6 (9-223)||(4743690-4743911)
chr6 (156-206)||(19119065-19119115)
chr6 (156-206)||(19126359-19126409)
chr6 (157-207)||(24417486-24417536)
[»] chr3 (15 HSPs)
chr3 (156-206)||(23197014-23197064)
chr3 (146-207)||(2492083-2492144)
chr3 (146-207)||(2631358-2631419)
chr3 (146-215)||(7442966-7443035)
chr3 (146-215)||(43991953-43992022)
chr3 (159-215)||(9608346-9608402)
chr3 (131-209)||(1891038-1891116)
chr3 (156-210)||(3754598-3754652)
chr3 (156-209)||(2696731-2696784)
chr3 (156-209)||(4142133-4142186)
chr3 (156-209)||(4157943-4157996)
chr3 (156-209)||(7432053-7432106)
chr3 (159-208)||(13498224-13498273)
chr3 (132-208)||(783774-783850)
chr3 (156-208)||(2442039-2442091)
[»] chr2 (3 HSPs)
chr2 (180-215)||(33038153-33038188)
chr2 (146-214)||(11237687-11237755)
chr2 (156-208)||(36577366-36577418)
[»] scaffold0044 (1 HSPs)
scaffold0044 (157-214)||(89137-89194)
[»] chr5 (2 HSPs)
chr5 (156-209)||(23766861-23766914)
chr5 (156-209)||(23816709-23816762)
[»] chr4 (2 HSPs)
chr4 (156-209)||(20019771-20019824)
chr4 (156-204)||(20016184-20016232)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 51756593 - 51756821
Alignment:
Q  1 ttttgggcttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaattt-cccctcttcacaaaatacattagcacttggtcatcct 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  51756593 ttttgggcttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaattttcccctcttcacaaaatacatcagcacttggtcatcct 51756692  T
Q  100 cagaaatatataatggtttggtatagatataatgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51756693 cagaaatatataatggtttggtatagatataatgatctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgat 51756792  T
Q  200 ccaaacatcaaaaaacttgtcactttgag 228  Q
    |||||||||||||||||||||||||||||    
T  51756793 ccaaacatcaaaaaacttgtcactttgag 51756821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 51855151 - 51854932
Alignment:
Q  11 caggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcccc-tcttcacaaaatacattagcacttggtcatcctcagaaatata 109  Q
    |||||||||| ||||||||||  ||||||||||||| |||||||||||| |||||| |||| | ||||||| | |||||||||||||| ||||| |||||    
T  51855151 caggaatcttcaaagtatcatggatggaatcatagacagccaaactaaacttccccatcttgaaaaaatacgtcagcacttggtcatcttcagatatata 51855052  T
Q  110 taatggtttggtatagatataatga------tctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaa 203  Q
    ||||||||||||||||||||||  |       ||||||| |||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  51855051 taatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaa 51854952  T
Q  204 acatcaaaaaacttgtcact 223  Q
    |||||| ||||||| |||||    
T  51854951 acatcagaaaacttctcact 51854932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 51762780 - 51762979
Alignment:
Q  12 aggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcccc-tcttcacaaaatacattagcacttggtcatcctcagaaatatat 110  Q
    |||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||| || |||||| |||||||||||||| ||||| ||||||    
T  51762780 aggaatcttaaaagtatcatttatggaaccatagacaaccaaactaaatttccccatcttcagaatatacatcagcacttggtcatcttcagatatatat 51762879  T
Q  111 aatggtttggt------atagatataatgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 204  Q
    ||||  |||||      ||| | |  | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51762880 aatgccttggttaaggaataaaaaccacgatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 51762979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 51858812 - 51858586
Alignment:
Q  9 ttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttccc-ctcttcacaaaatacattagcacttggtcatcctcagaaata 107  Q
    |||||||||||| || |||||||| ||||||||||||| |||||| ||||||||||| ||||| | |||||| || |||| | || |||| ||||| |||    
T  51858812 ttcaggaatcttcaatgtatcattaatggaatcatagacagccaacctaaatttccctctcttgaaaaaatatatcagcattaggccatcttcagatata 51858713  T
Q  108 tataatggtttggtatagatataatgatc------tcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcc 201  Q
    ||||||  ||||||||||||||||  | |      |||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  51858712 tataatactttggtatagatataacaaccacaacctcccatttgaggaacacttaacaatttagtccaagattctacatttccatattccttcatgatcc 51858613  T
Q  202 aaacatcaaaaaacttgtcactttgag 228  Q
    |||||||| ||||||||||||| ||||    
T  51858612 aaacatcagaaaacttgtcactatgag 51858586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 51782861 - 51782790
Alignment:
Q  146 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaactt 217  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  51782861 aggaacacttaataatttattccaagattgttcatttccatattccttcataatccaaacatcataaaactt 51782790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 51407546 - 51407604
Alignment:
Q  144 tgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcca 202  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  51407546 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 51407604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 51832447 - 51832362
Alignment:
Q  134 atctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgt 219  Q
    |||| |||| |||||||  || ||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||  |||||||||    
T  51832447 atcttccatatgaggaatgctcaacaatttagtccaagattgttcatttccatattctttcattatccaaatatcggaaaacttgt 51832362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 51221064 - 51221118
Alignment:
Q  12 aggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcccc 66  Q
    |||||||||||| |||| ||||||||||||||||| | |||||||||||||||||    
T  51221064 aggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttcccc 51221118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 51381444 - 51381518
Alignment:
Q  146 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtc 220  Q
    ||||| ||| ||||||||||||||||| | | ||||||||||||| ||||| ||||||| |||| ||||||||||    
T  51381444 aggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatcagaaaacttgtc 51381518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 51381300 - 51381403
Alignment:
Q  9 ttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcccc-tcttcacaaaatacattagcacttggtcatcctcagaaata 107  Q
    |||||||||||| |||||||||||| |||||||||||| |  |||||| ||||||||| |||| | ||| | ||| |  ||||||||||| || ||||||    
T  51381300 ttcaggaatcttcaaagtatcatttttggaatcatagacaagcaaactgaatttccccatctttagaaactgcatcaaaacttggtcatcttccgaaata 51381399  T
Q  108 tata 111  Q
    ||||    
T  51381400 tata 51381403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 51221193 - 51221282
Alignment:
Q  134 atctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcact 223  Q
    ||||| ||| |||||||| | ||||||| |||||||||| | | |||| || ||||| ||||| |||||||||||| ||||| |||||||    
T  51221193 atctctcatgtgaggaacccgtaacaatatagtccaagaattttcattcccgtattcattcattatccaaacatcagaaaacatgtcact 51221282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 51829827 - 51829766
Alignment:
Q  158 caatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgt 219  Q
    ||||||| ||||||||||  ||||||||||||| ||||| ||||||||||| ||||| ||||    
T  51829827 caatttaatccaagattggtcatttccatattctttcattatccaaacatcgaaaaagttgt 51829766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 4182846 - 4183067
Alignment:
Q  9 ttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcc-cctcttcacaaaatacattagcacttggtcatcctcagaaata 107  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||    
T  4182846 ttcaggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcctcctcttcataaaatacatcagcacttggtcatgctcagaaata 4182945  T
Q  108 tataatggtttggt------atagatataatgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcc 201  Q
    ||||||||||| ||      ||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4182946 tataatggtttagttaagatatatatataagcatctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcc 4183045  T
Q  202 aaacatcaaaaaacttgtcact 223  Q
    ||||||||||||||||||||||    
T  4183046 aaacatcaaaaaacttgtcact 4183067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 4743690 - 4743911
Alignment:
Q  9 ttcaggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaatttcc-cctcttcacaaaatacattagcacttggtcatcctcagaaata 107  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||    
T  4743690 ttcaggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcctcctcttcataaaatacatcagcacttggtcatgctcagaaata 4743789  T
Q  108 tataatggtttggt------atagatataatgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcc 201  Q
    ||||||||||| ||      ||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4743790 tataatggtttagttaagatatatatataagcatctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcc 4743889  T
Q  202 aaacatcaaaaaacttgtcact 223  Q
    ||||||||||||||||||||||    
T  4743890 aaacatcaaaaaacttgtcact 4743911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 19119115 - 19119065
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaaca 206  Q
    ||||||||||||||||| | | ||||||||||||||||||| | |||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 19126409 - 19126359
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaaca 206  Q
    ||||||||||||||||| | | ||||||||||||||||||| | |||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 24417486 - 24417536
Alignment:
Q  157 acaatttagtccaagattgtccatttccatattccttcatgatccaaacat 207  Q
    |||||||||||||||||| |  |||||||||||| ||||| ||||||||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 23197064 - 23197014
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaaca 206  Q
    ||||||||||||||||||| | ||||||||||||||||||| | |||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 2492144 - 2492083
Alignment:
Q  146 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacat 207  Q
    |||||||||  |||||||||||||||| | || ||||||||| |||||||| ||||||||||    
T  2492144 aggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 2631419 - 2631358
Alignment:
Q  146 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacat 207  Q
    |||||||||  |||||||||||||||| | |  |||||||||||||||||| ||||||||||    
T  2631419 aggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 7442966 - 7443035
Alignment:
Q  146 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaac 215  Q
    |||||||||  |||| ||||||||||| | |  ||||||||| ||||||||||||||||||| |||||||    
T  7442966 aggaacactatacaacttagtccaagactcttgatttccatactccttcatgatccaaacattaaaaaac 7443035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 43992022 - 43991953
Alignment:
Q  146 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaac 215  Q
    |||||||||  ||||||| |||||||| | |  |||||||||||||||||| ||||||||||| ||||||    
T  43992022 aggaacactatacaatttggtccaagactctatatttccatattccttcataatccaaacatccaaaaac 43991953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 9608346 - 9608402
Alignment:
Q  159 aatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaac 215  Q
    |||||||||||||| | |  |||||||||||||||||| | ||||||||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaac 9608402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 1891038 - 1891116
Alignment:
Q  131 atgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 209  Q
    |||||||| ||| | || ||||||  |||||||||||||||| | |  |||||||| ||||||||| ||||||||||||    
T  1891038 atgatctcgcatgtaagaaacactatacaatttagtccaagagtctttatttccatgttccttcataatccaaacatca 1891116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 3754652 - 3754598
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaa 210  Q
    ||||||||||||||||| | |  |||||||||||||||||| | |||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaacatcaa 3754598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 2696731 - 2696784
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 209  Q
    ||||||||| ||||||| | |  |||||||||||||||||| ||||||||||||    
T  2696731 aacaatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 4142133 - 4142186
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 209  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  4142133 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 4157943 - 4157996
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 209  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  4157943 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 7432053 - 7432106
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 209  Q
    |||||||||||||| |||| |  ||||||||||||||||||  |||||||||||    
T  7432053 aacaatttagtccacgattctttatttccatattccttcatactccaaacatca 7432106  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  159 aatttagtccaagattgtccatttccatattccttcatgatccaaacatc 208  Q
    |||||||||||||| | |  |||||||||||||||||| |||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 783774 - 783850
Alignment:
Q  132 tgatctcccatctgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 208  Q
    ||||||||||| | ||||||| |  ||||||||||||| |  | |  |||||||||||||||||| |||||||||||    
T  783774 tgatctcccatgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatc 783850  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 2442091 - 2442039
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 208  Q
    ||||||||||||||||| | |  ||||||||| |||||||| |||||||||||    
T  2442091 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 33038188 - 33038153
Alignment:
Q  180 tttccatattccttcatgatccaaacatcaaaaaac 215  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33038188 tttccatattccttcataatccaaacatcaaaaaac 33038153  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 11237755 - 11237687
Alignment:
Q  146 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaa 214  Q
    ||||||||  |||||||||||||||| || || ||||||||| |||| ||| | ||||||||| |||||    
T  11237755 aggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaa 11237687  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 208  Q
    ||||||||| ||||||| | |  |||||||||||||||||| |||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 89194 - 89137
Alignment:
Q  157 acaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaa 214  Q
    |||||||||||||||| | |  |||||||||||||||||| | ||||| |||||||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 23766861 - 23766914
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 209  Q
    ||||||||||||||||| | |  |||||||||||| ||||| ||||||||||||    
T  23766861 aacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23766914  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 23816709 - 23816762
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 209  Q
    ||||||||||||||||| | |  |||||||||||| ||||| ||||||||||||    
T  23816709 aacaatttagtccaagactctttatttccatattctttcataatccaaacatca 23816762  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 20019771 - 20019824
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 209  Q
    ||||||||||||||||| | |  | |||||||||||||||||| ||||||||||    
T  20019771 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 20019824  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 20016184 - 20016232
Alignment:
Q  156 aacaatttagtccaagattgtccatttccatattccttcatgatccaaa 204  Q
    ||||||||||||||||| | |  | ||||||||||||||||||||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

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