View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11751_low_33 (Length: 224)

Name: NF11751_low_33
Description: NF11751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11751_low_33
NF11751_low_33
[»] chr1 (4 HSPs)
chr1 (1-221)||(29442916-29443136)
chr1 (30-221)||(29423589-29423780)
chr1 (55-218)||(29452956-29453119)
chr1 (40-218)||(29467418-29467595)
[»] chr2 (11 HSPs)
chr2 (86-195)||(12012220-12012329)
chr2 (53-221)||(9283831-9283999)
chr2 (136-185)||(9274872-9274921)
chr2 (153-213)||(8579228-8579288)
chr2 (145-221)||(10353442-10353518)
chr2 (55-185)||(9060778-9060908)
chr2 (53-195)||(11987122-11987264)
chr2 (55-112)||(9292358-9292415)
chr2 (55-112)||(9357613-9357670)
chr2 (55-185)||(10336198-10336331)
chr2 (55-112)||(8573142-8573199)
[»] scaffold0667 (1 HSPs)
scaffold0667 (55-202)||(4823-4970)
[»] chr4 (1 HSPs)
chr4 (55-218)||(26575197-26575360)
[»] chr3 (1 HSPs)
chr3 (55-185)||(37462855-37462985)
[»] chr8 (1 HSPs)
chr8 (55-185)||(41966366-41966496)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29442916 - 29443136
Alignment:
Q  1 ttcctactcctcaacaccatgaatctaacaacaacatttacgtcggcttttacattcacggcttcggttttgatccattgaccaacgactacaaactcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  29442916 ttcctactcctcaacaccatgaatctaacaacaacatttacgtcggcttttgcattcacggcttcggttttgatccattgaccaacgattacaaactcat 29443015  T
Q  101 cagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgttagactcttcagcttcaaaacaaactcgtggaaagaacttcctactatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443016 cagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgttagactcttcagcttcaaaacaaactcgtggaaagaacttcctactatg 29443115  T
Q  201 ccttacactctttcctatgct 221  Q
    |||||||||||||||||||||    
T  29443116 ccttacactctttcctatgct 29443136  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 29423780 - 29423589
Alignment:
Q  30 aacaacatttacgtcggcttttacattcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaac 129  Q
    |||||||| |||| || ||||| | || |||||||||||||||||||||| ||  | || ||||||||| ||| |||||  || ||||| | | ||||||    
T  29423780 aacaacatctacgccgacttttgcgtttacggcttcggttttgatccattaactgatgattacaaactcctcacaatcttctgtttcgtcgagatacaac 29423681  T
Q  130 actctacttttgaatcacatgttagactcttcagcttcaaaacaaactcgtggaaagaacttcctactatgccttacactctttcctatgct 221  Q
    | ||||||| |||||||||||  |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  29423680 aatctacttctgaatcacatgcgagactcttcagctcgaaaacaaactcgtggaaagaacttcctaccatgccttacactctttactatgct 29423589  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 29452956 - 29453119
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgttag 154  Q
    |||||||||| ||||||||||| || | |  ||| ||||||||| |||||||||||||  ||||||    |||| ||||||||| ||| |||||||| ||    
T  29452956 ttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctcttgtatcgttgatccacaatactctacttctgattcacatgtgag 29453055  T
Q  155 actcttcagcttcaaaacaaactcgtggaaagaacttcctactatgccttacactctttcctat 218  Q
    |||||||||||  ||||  |||||||||||||| ||||||| |||||| ||| |||||||||||    
T  29453056 actcttcagctcgaaaatgaactcgtggaaagaccttcctagtatgccgtacgctctttcctat 29453119  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 29467418 - 29467595
Alignment:
Q  40 acgtcggcttttacattcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttt 139  Q
    |||||||||||| | ||||||||||||||||||||||||| ||| | || ||||||||| ||||||||||||| |||||     |||| |||   |||      
T  29467418 acgtcggcttttgcgttcacggcttcggttttgatccattaaccgatgattacaaactc-tcagaatctcttgtttcgtcaaactacaccaccacactca 29467516  T
Q  140 tgaatcacatgttagactcttcagcttcaaaacaaactcgtggaaagaacttcctactatgccttacactctttcctat 218  Q
    ||| |||||||||| |||||||||||  ||||| ||||| ||||||| |||| ||| |||||| ||| |||||| ||||    
T  29467517 tgattcacatgttacactcttcagctcgaaaacgaactcctggaaagtactttctagtatgccgtactctctttactat 29467595  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 12012220 - 12012329
Alignment:
Q  86 cgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgttagactcttcagcttcaaaacaaactcgtggaaa 185  Q
    ||||||||| || |||||||||||||| |||||||   ||||| ||||||||||||| ||| |||| |||||||||| ||  ||||||||||||||||||    
T  12012220 cgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcatatgtcagactcttcacctcgaaaacaaactcgtggaaa 12012319  T
Q  186 gaacttccta 195  Q
    | ||||||||    
T  12012320 gtacttccta 12012329  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 221
Target Start/End: Original strand, 9283831 - 9283999
Alignment:
Q  53 cattcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgtt 152  Q
    |||||||||||||||||||||||| || |||  ||| ||||||||| || ||||||||||  | ||     ||||| |||||  || | | |||||||      
T  9283831 cattcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttggctagtatctctacaaaactctttttatcattcacatgcc 9283930  T
Q  153 agactcttcagcttcaaaacaaactcgtggaaagaacttcctactatgccttacactctttcctatgct 221  Q
    ||||||||||||| |||||||||||||||||||  | |||||| |||||| |||||| ||| |||||||    
T  9283931 agactcttcagctccaaaacaaactcgtggaaaataattcctattatgccctacactgtttactatgct 9283999  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 9274921 - 9274872
Alignment:
Q  136 cttttgaatcacatgttagactcttcagcttcaaaacaaactcgtggaaa 185  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  9274921 cttttgaatcacatgtgagactcttcagcttgaaaacaaactcgtggaaa 9274872  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 8579228 - 8579288
Alignment:
Q  153 agactcttcagcttcaaaacaaactcgtggaaagaacttcctactatgccttacactcttt 213  Q
    ||||||||||||| |||||||||||||||||||| |||||||| ||| || ||| ||||||    
T  8579228 agactcttcagctccaaaacaaactcgtggaaagcacttcctaatatcccgtacgctcttt 8579288  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 10353518 - 10353442
Alignment:
Q  145 cacatgttagactcttcagcttcaaaacaaactcgtggaaagaacttcctactatgccttacactctttcctatgct 221  Q
    ||||||| |||||||||||||| ||||||||||| ||||||| | |||||| | |||||||  |||||| |||||||    
T  10353518 cacatgtcagactcttcagcttgaaaacaaactcatggaaagtaattcctaatttgccttattctctttactatgct 10353442  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 9060778 - 9060908
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgttag 154  Q
    ||||||||||||||||||||||||| |||  ||| ||||||||| |||||||| |||| ||  |||    |||| ||  |  || ||| |||||||| ||    
T  9060778 ttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatcacttggttatttgctcgacaaaacattttttatgattcacatgtcag 9060877  T
Q  155 actcttcagcttcaaaacaaactcgtggaaa 185  Q
     ||||| ||||| ||||||||||||||||||    
T  9060878 tctctttagcttgaaaacaaactcgtggaaa 9060908  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 11987122 - 11987264
Alignment:
Q  53 cattcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgtt 152  Q
    ||||||||| ||||| |||||||| ||  |   ||| ||||||||||||||||||||||| || ||||   ||||  ||  ||||||||| ||| ||||     
T  11987122 cattcacggattcggctttgatcctttttcatccgattacaaactcatcagaatctcttggtttgttgatctacacaaccgtacttttgattcatatgtc 11987221  T
Q  153 agactcttcagcttcaaaacaaactcgtggaaagaacttccta 195  Q
    |||||||||| ||  || || ||||||||||||| ||||||||    
T  11987222 agactcttcacctcgaagacgaactcgtggaaagtacttccta 11987264  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 9292415 - 9292358
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttg 112  Q
    ||||||||||||||| ||||||||| |||  ||| ||||||||| |||||||||||||    
T  9292415 ttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttg 9292358  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 9357670 - 9357613
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttg 112  Q
    |||||||||||||||||||||| || |||  ||| ||||||||| |||||||||||||    
T  9357670 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttg 9357613  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 10336331 - 10336198
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttttg---aatcacatgt 151  Q
    ||||||| |||||||||||| ||||  ||  ||| ||||||||| ||||||||||||| ||||| |   ||||||||  ||||||||   | |||||| |    
T  10336331 ttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctcttggttcgtcgatctacaacaccatacttttgataattcacattt 10336232  T
Q  152 tagactcttcagcttcaaaacaaactcgtggaaa 185  Q
     | |||||||||||  ||||||||||| ||||||    
T  10336231 gacactcttcagctcgaaaacaaactcttggaaa 10336198  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 8573142 - 8573199
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttg 112  Q
    ||||||||||||||||||||| ||| |||  ||| ||||||||| || ||||||||||    
T  8573142 ttcacggcttcggttttgatctattaaccgccgattacaaactcctccgaatctcttg 8573199  T

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Target: scaffold0667 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 4970 - 4823
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgttag 154  Q
    |||||||||||||||||||||| || |||  ||| |||||| || ||||| ||||||| || ||     ||||| || ||  || |||  ||||||||||    
T  4970 ttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcagactctcttggttagtctctctacaaaaccctttttatgatccacatgttag 4871  T
Q  155 actcttcagcttcaaaacaaactcgtggaaagaacttcctactatgcc 202  Q
    |||||| ||||| ||||| ||||||||||||  | |||||||||||||    
T  4870 actctttagcttgaaaaccaactcgtggaaaataattcctactatgcc 4823  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 26575360 - 26575197
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgttag 154  Q
    |||||||||||||||||||| | ||  ||  ||| ||||||||| |||||||||||| |||  | |   ||||| || ||  || |||  ||||||||||    
T  26575360 ttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatccacatgttag 26575261  T
Q  155 actcttcagcttcaaaacaaactcgtggaaagaacttcctactatgccttacactctttcctat 218  Q
    |||||||||||| ||||||||||| ||||||  | |||||| | | |||||| |||||| ||||    
T  26575260 actcttcagcttgaaaacaaactcatggaaaataattcctaattttccttacgctctttactat 26575197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 37462985 - 37462855
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttg-cttcgttggggtacaacactctacttttgaatcacatgtta 153  Q
    |||||||||||||||||||| | || |||  ||| ||||||||| ||||||||||||| |||| | |   ||||| || ||  || |||  ||||||| |    
T  37462985 ttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctcttggcttc-tcgatctacaaaaccctttttatgatccacatgtga 37462887  T
Q  154 gactcttcagcttcaaaacaaactcgtggaaa 185  Q
    |||||||||||| |||||||||||||||||||    
T  37462886 gactcttcagctccaaaacaaactcgtggaaa 37462855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 41966366 - 41966496
Alignment:
Q  55 ttcacggcttcggttttgatccattgaccaacgactacaaactcatcagaatctcttgcttcgttggggtacaacactctacttttgaatcacatgttag 154  Q
    ||||||| ||||||||||||||||| |||| |||  |||||||| ||||||||||||| |   |||    ||||| |||||||||||| |||||||| ||    
T  41966366 ttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaatctcttggtcttttgatcaacaactctctacttttgattcacatgtcag 41966465  T
Q  155 actcttcagcttcaaaacaaactcgtggaaa 185  Q
     || || ||||  ||||  ||||||||||||    
T  41966466 gctatttagctctaaaaacaactcgtggaaa 41966496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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